Glycine soja (wild soybean): 114387890
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Entry
114387890 CDS
T06057
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114387890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114387890
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114387890
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
114387890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
114387890
NCBI-ProteinID:
XP_028203922
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Position
15:complement(3371541..3379195)
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AA seq
663 aa
AA seq
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MSSLLNSSLNGSASNLPDGAGRSFATSFSGQSGVASPVFHHSGSIQGLHNIHGNFNVPNM
PSTLTSRNSTINSVPTGGGVQQPSASLSSGRFASNNLPVALSQLSHGSSHGHSGVNSRGG
ISVVGNPGFNSSTNGVAGPIPGILPTSAAIGNRNAVPGLGVSPILGNAGPRITSSMGNMV
GGGNIGRISSGGLSVPGLASRLNLSGNTGSGGLGVQGQNRLMSGVLPQGSPQVISMLGNS
YPSAGGPLSQSHVQTVNNLNSMGMLNDVNSGDSTPFDINDFPQLTSRPSSAGGPQGQLGS
LRKQGLPIVQQNQEFSIQNEDFPALPGFKGGNSDFAMDMYQKEQLHDNTVSMMQSQHFSQ
MGRSAGFSLGGSYPSHRTQQQQQHAPSVSSNGVSFSSVNNQDLLHLHGTDIFPSSHSTYH
SQTSGPPGIGLRPLNSPNTVSGMGSYDQLIQQYQQHQNQSQFRLQQMSAANQSFRDQGMK
SMQTAQSSPDPFGALGLFSVVHISDPNLKYLAHGIDLTTLGLNLNSSENLYKTFRSPWSD
EPAKGDPEFSVLQCYYVKQPPALHQGYFSKFSVETLFYIFYSMPKDEAQLYAANELYKRG
WFYHKEHRLWFIRVPNMEPLVKTNTYERGSYHCFDPNTFETVRKDNFVLHYEMVEKRPSV
PQH
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagcttacttaattcttctctgaatgggtctgcttcaaatcttccggatggtgct
gggcgttcttttgctacgtcattctctggtcagtctggtgtagcctccccagtttttcat
cactctggttctattcagggattgcacaacattcatgggaactttaatgtacccaatatg
cccagtacactcacatcaagaaactcaacaataaatagtgttccaactgggggaggagtt
cagcaaccttcggcaagcctttctagtggaagatttgcatcaaataatctacctgttgct
ctgtcacagctatctcatggaagctcccatggacattcaggagtcaacagcagaggaggt
ataagtgttgtaggaaatcctggatttaatagtagcacaaatggagttgctggtcctatt
cctgggattcttccaacttctgctgcaattggtaaccgaaatgctgttccaggattggga
gtatccccaattttgggaaatgcaggtccccgaatcactagttcgatgggaaacatggtc
ggtggagggaacattgggaggataagctctggaggattgtctgttccaggtcttgcttct
cgtctaaatttaagtggaaacactggatctggtggtttaggtgtgcaaggacaaaataga
ttgatgagtggtgtgcttccacaaggatctccacaggtaatttcaatgctaggaaattcc
tatcctagtgctggaggtccgctttcacaaagtcatgttcaaacagtaaataacttgaac
tctatggggatgctgaatgatgtgaattccggtgacagtacaccttttgacatcaatgac
tttcctcaactgaccagtcgtcctagttctgctggtgggcctcaaggacagttgggttct
ttacgaaaacagggtcttcccattgtccaacaaaaccaagagtttagtattcaaaatgaa
gacttcccagctttaccaggattcaaaggtggtaattcagattttgctatggatatgtac
cagaaagaacaacttcatgataatactgtgtcaatgatgcaatctcaacatttctcccag
atggggaggtctgctggtttcagtttgggaggatcatatccatcacatcgtacacaacag
caacagcagcatgccccttctgtcagtagcaatggtgtctcattttcatctgtaaacaat
caagatcttctccatctgcatggaacggatatttttccatcttcacactcaacatatcat
tcccagaccagtgggcctcctggcattggactaaggcctctgaattctccaaatacggtt
tctggtatgggttcatatgaccagcttatccagcagtatcaacagcaccagaaccagtcc
cagttccgccttcagcagatgtcagctgcaaatcagtcttttagggatcagggcatgaag
tctatgcaaactgctcaatctagtccagatccatttggtgcacttggcttgttcagtgta
gtccatataagtgatcctaacctgaaatatcttgctcatgggattgatcttacaacactt
gggttgaatttgaattcatcagaaaacctttacaagacttttcggtccccgtggtctgat
gaaccagccaagggtgatccagagttcagtgtgttacaatgttattatgttaaacagcct
cctgctcttcatcaaggttatttttcaaagttttcggtggaaactttgttttacatattt
tacagcatgcccaaagatgaagcacaactatacgcggcaaatgaactttacaaacgtggt
tggttttatcataaagagcatcgtttatggtttataagagttcccaacatggagccgctt
gtcaaaacaaacacatacgagagaggatcttaccactgttttgatccaaacacatttgaa
acagtccggaaggataattttgttcttcattatgaaatggtggaaaagagaccgtctgtg
cctcaacattga
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