Glycine soja (wild soybean): 114387963
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Entry
114387963 CDS
T06057
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114387963
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gsj03021
]
114387963
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114387963
Transcription machinery [BR:
gsj03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
114387963
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
114387963
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
zf-CCCH_2
Torus
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
114387963
NCBI-ProteinID:
XP_028204068
LinkDB
All DBs
Position
15:10249292..10259421
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AA seq
691 aa
AA seq
DB search
MEDSEGVLSFDFEGGLDAAPSSAAAAVPSGPLVQHDSSAAASAVSNGGHAAPAPSTADPA
GGNVPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYK
HTNEDIKECNMYKLGFCPNGPDCRYRHAKSPGPPPPVEEVLQKIQHLFSYNYNSSNKFFQ
QRGASYNQQAEKPQLPQGTNSTNQGVTGKPLPAESGNAQPQQQVQQSQQQVNQSQMQNVA
NGQPNQANRTATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVEN
VILVFSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKT
RHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAISVAAESKREEEKAKG
VNPDNGGENPDIVPFEDNEEEEEEESDEEEESFSHGVGPAGQGRGRGRGMMWPPHMPLGR
GARPMPGMQGFNPVMMGDGLSYGPVGPVGPDGFGMPDLFGVGPRGFAPYGPRFSGDFGGP
PAAMMFRGRPSQPGMFPSGGFGMMMNPGRGPFMGGMGVGGANPPRGGRPVNMPPMFPPPP
PLPQNANRAAKRDQRTADRNDRFGSGSEQGKSQDMLSQSGGPDDDAQYQQGYKGNQDDHP
AVNNFRNDDSESEDEAPRRSRHGEGKKKHKL
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggaggattccgagggagtcctcagcttcgatttcgagggcggcctcgacgccgctccc
tcctccgccgccgccgccgttccctccggccccctcgtccagcacgactcctccgcggca
gcttccgccgtgtccaacggaggccacgccgcccccgccccgtccacggcggaccccgcc
ggcggcaacgtcccggggcggcggagcttccggcagacggtttgccggcactggctgcgc
agcctgtgcatgaagggcgacgcgtgcgggttcctgcaccagtacgacaaggcgaggatg
ccggtgtgccgcttcttcaggctctacggagagtgccgagaacaggattgcgtctataaa
cacaccaatgaagacatcaaggagtgtaacatgtacaagttgggattttgtcctaatgga
cctgattgtcgatataggcatgcaaaatctcctggacctccacctcctgttgaagaggtt
cttcaaaagatccaacatttattttcctacaattataactcatccaacaaatttttccaa
caaagaggtgctagttataatcaacaagctgaaaaaccccagcttcctcaaggaactaat
tctacaaaccaaggggtgactggaaaaccattaccagcagagtcgggaaatgcccagcca
cagcaacaagttcagcagtcccagcagcaggttaaccagagccaaatgcaaaatgttgct
aatggccagcctaatcaagcaaatagaactgcaacccctttacctcaaggaatatctagg
tattttattgttaaaagttgcaatcgtgaaaatttggagttatctgtacaacaaggagtt
tgggcaactcaaaggagcaatgaatccaaactaaatgaagcatttgactctgtggaaaat
gtgatattagttttctcagtcaaccgtactagacatttccagggttgtgcaaagatgaca
tccagaattggtggttctgttgctggggggaattggaaatatgctcatggaactgcacat
tatggacgaaatttctctgttaaatggttgaagttatgtgaactgtcattccacaaaact
cgccatttaaggaatccatacaatgagaacttaccagtgaagataagtagagattgtcag
gagctggagccctctattggagagcagctggcatccttgctttatcttgagccagatagt
gaacttatggctatctcggttgcagccgaatctaaacgggaagaagagaaagccaaggga
gtgaatccagataatggaggagaaaatccagatattgtaccatttgaagacaatgaagaa
gaggaagaagaagagagtgatgaagaggaggagagcttcagtcatggtgtagggccagct
ggccaaggcagaggtaggggaagaggtatgatgtggccgcctcatatgcctcttgggcgt
ggagcccgacccatgcctggaatgcagggctttaaccctgtaatgatgggtgatgggtta
tcgtatgggcctgttggtcctgttggacctgatggctttggtatgccagatcttttcggt
gtgggaccccgtggttttgctccatatggtcctaggttctctggtgattttggaggtccc
ccagcagccatgatgtttcgtgggcgaccatctcaacctgggatgtttccaagtggtggg
tttgggatgatgatgaatcctggacgtggtcctttcatgggtgggatgggggttggaggt
gcaaatccaccaagaggtggtaggccagttaatatgcctccaatgtttccaccacctcca
ccgctaccacagaacgcaaaccgtgctgccaaaagagatcaaagaactgctgatcggaat
gataggtttggttcaggatccgagcagggtaagagtcaagacatgctcagtcaaagtggc
ggacctgatgatgacgcacagtatcaacaaggatacaaagggaaccaagatgatcatcct
gctgtgaacaacttcaggaatgatgatagtgaaagtgaggacgaggcacctaggaggtca
agacatggagaggggaaaaagaaacacaaactataa
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