Glycine soja (wild soybean): 114388400
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Entry
114388400 CDS
T06057
Name
(RefSeq) sm-like protein LSM8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03018
RNA degradation
gsj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114388400
09123 Folding, sorting and degradation
03018 RNA degradation
114388400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114388400
03041 Spliceosome [BR:
gsj03041
]
114388400
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114388400
mRNA degradation factors
5'-3' decay
Lsm complex
114388400
Spliceosome [BR:
gsj03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
114388400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
114388400
NCBI-ProteinID:
XP_028204672
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Position
15:48505695..48509194
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AA seq
98 aa
AA seq
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MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
LYIIRGDNISVVGELDEELDSSLDLSKLRAHPLKPVIH
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atgtcagctgggcctggacttgaatctcttgtagatcagacaatttcagtcattacaaat
gatggacgaaatatagtgggagtcctgaaaggttttgatcaggcaacaaatataattctt
gatgagtcccatgaacgagtttattctaccaaggaaggtgtacaacaacttgttcttggt
ttatacatcatcaggggtgacaacataagtgttgttggtgaactagatgaagaactggat
tctagtctggatttgtcaaaactcagagctcatcccttgaaacctgttatccattga
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