Glycine soja (wild soybean): 114388728
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Entry
114388728 CDS
T06057
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114388728
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gsj03041
]
114388728
03009 Ribosome biogenesis [BR:
gsj03009
]
114388728
Enzymes [BR:
gsj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
114388728
Spliceosome [BR:
gsj03041
]
Complex A
U1 snRNP components
U1 related factors
114388728
Complex B
114388728
Ribosome biogenesis [BR:
gsj03009
]
Eukaryotic type
Pre-60S particles
Helicases
114388728
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
Motif
Other DBs
NCBI-GeneID:
114388728
NCBI-ProteinID:
XP_028205177
LinkDB
All DBs
Position
15:11014390..11022303
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AA seq
1201 aa
AA seq
DB search
MATAEAASAGLGPRYAPDDPTLPQPWKGLIDGSTGLLYYWNPETNVTQYEKPTPPVPSGP
APSLAPIPGAHTVQPGGKVQQHGQQMQQVQSSQQQMGHLTQQHGQSMPPQQQSPHMAQVT
QQQSSHGAQAAQQQNQHGQKMMQQPQGQQMMQQPQGQQMMQQPQGQQMMQQPQGQQMMQP
QGHQARQQMMQPQGQQMHRQMPPQAIHSQHFVQGMPQDHGSHIVQPQTHQFTPQNMHYMS
YQQNAITSRQPNSQHSQPNMVSPGQPNSQQVQHNMHGQPFENQQTTYPKVEEVDSKNGSQ
VGHSPSQYPQRSALPVQNNQNIPAEVGSGQVPNVGVNAGQPQQFRALSNSMQQSPSGSDL
YYQHGPNFHSQMSPGMMHGHPSNVLPSGQKMGPEDSLRVRAGNEYYYNSNKDMATMGRQQ
PDITPIPIPRNQQDMRIGNTPFQNVMPSGNGSGIAGNAVPSMFVPPIGGPSPLSTNPLMR
PPYMGSSDATDLSPAEIYCQQHEVTATGDNIPPPFMTFDATGFPPEILREIYSAGFSSPT
PIQAQTWPVALQGRDIVAIAKTGSGKTLGYLMPAFILLRQRCNNSLNGPTVLVLAPTREL
ATQIQDEVVKFGRSSRVSCTCLYGGAPKALQLKELDRGADIVVATPGRLNDILEMKKIDF
GQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQ
VNIGSVDELAANKAITQYVEVVPQMEKQRRLEQILRSQERGSKVIIFCSTKRLCDQLARS
IGRTFGAAAIHGDKSQGERDWVLSQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPTG
IEDYVHRIGRTGRAGATGVSYTFFSEQDWKHAGDLIKVLEGANQHVLPELRQMALRGPSN
FGKDRGGVSRFDSGGGGGRWDTGGRGGMRDGGFGGRGGGMRDGGFGGRGGGFGGRGGGMR
DGSFGGRGGGFGGRGGIRDGGSGQGGRGDFFPGRGNRGRGSGGPRGGHVGWGRGERGMDD
RYNMDGRGQGRGRGRFDNRRDVSYKGRGRSYSRSPERVRTWDYSRSSSRSRSRSRSRSWS
RGRSRSRSWSRGRSRSYSRSISPRRNRSRSRGRSYSRSHSRSPSYDRRNRSDQQLPDQKD
LRAQEVGTSDPRMLPVSSGSGSQGNSFLGTEQVEQQPVVSSTDAGNPEAVADLSHQSASD
I
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagcggaggcagcttctgctgggcttggtcccagatatgcacctgatgatcct
acccttccacaaccgtggaaggggttgattgatggcagcactggtcttttatactattgg
aatcctgaaaccaatgttacgcaatacgaaaaaccgacaccaccagtgccttcaggccct
gcgccgagcttggcacctataccaggggctcatacagtgcagcctggtggaaaggtgcag
cagcatgggcagcagatgcagcaggtgcaatcctcgcaacagcagatgggtcaccttacc
caacagcatggccaatctatgccaccgcagcagcagagtccccatatggcacaggtcact
cagcagcagtcctctcacggtgctcaggcagcacagcaacagaaccaacatgggcagaaa
atgatgcagcagcctcaagggcagcaaatgatgcagcagccccaagggcagcaaatgatg
cagcagccccaagggcagcaaatgatgcagcagccccaagggcagcaaatgatgcagcct
caaggacatcaagccaggcagcaaatgatgcagcctcaaggacagcaaatgcatcgtcag
atgccgccacaggcgatccattcccagcattttgtgcaaggaatgcctcaggatcatggt
tcacacattgtacaaccacaaacacatcaattcactccccaaaacatgcattatatgtcg
tatcagcaaaatgcaattacatccaggcaaccaaactcccagcacagtcagccaaacatg
gtatcacctgggcaacctaactcccagcaggttcagcataacatgcacggtcagcccttt
gaaaaccaacaaacaacatatccaaaggtagaggaagtggattctaaaaatggaagccag
gttggacattcgccatcccagtatccacaaaggagtgccttgcccgttcagaacaaccag
aacattcctgccgaagttggttctggtcaagtacctaatgtaggtgtcaatgctggccaa
ccacaacaattcagggccttatctaacagtatgcaacaatcgccctctggatctgattta
tattaccaacatggtcctaactttcatagccagatgagcccaggaatgatgcatggtcat
ccatccaatgtccttccttctggccaaaagatgggtcccgaggatagcttacgtgttaga
gcagggaatgaatattactataattctaacaaagatatggcaacaatgggtcgtcagcag
ccagatataactccaatacccattccaagaaatcagcaggatatgaggattggcaacact
ccttttcaaaatgtaatgccaagtggaaatggaagtggtattgctgggaatgctgtgcct
agcatgtttgttcctccaataggaggaccttcacctctctctactaaccctttaatgagg
cctccttatatgggatcttcagatgctactgatctctcaccagctgaaatttactgtcag
caacatgaagttacagcaacgggtgacaacattccacctcctttcatgacatttgatgct
actgggttccctccagagatattgagagagatatattctgctggcttctcaagtccaaca
ccaatacaggctcaaacatggcctgttgcactacaaggtagagacatagtcgcaattgcc
aaaacaggctctggaaaaacattaggctacttaatgcctgccttcattcttcttagacag
cgatgtaacaattctctgaatggccccactgtcttggttttggctccaacacgtgaactt
gcgacacagatccaagatgaggtcgtcaaatttggtcgatcatcacgagtctcttgcacg
tgcttgtatggtggagcacctaaagcccttcaactaaaagagttggaccggggagcagac
attgttgttgccacacccggtcggctcaacgatatacttgaaatgaagaaaattgacttt
gggcaagtttcgctccttgtgcttgatgaggctgaccgaatgcttgacatgggttttgag
cctcaaattcgtaagattgtgaatgagattccaccacgcagacaaactctcatgtacaca
gcaacctggccaaaagaagtaagaaagattgctagcgatcttcttgttaatcctgtccag
gttaacattggaagtgtagacgagcttgctgcaaataaagctatcacacagtatgttgaa
gttgttccacaaatggagaaacagaggcgtttggagcaaatcctcagatcccaagaacgg
ggttctaaggtcataatattttgttccacaaagaggttatgtgaccagcttgctcgtagt
attggccggacttttggggctgctgcaattcatggtgacaagtctcaaggtgagagagac
tgggttttaagtcagttccggactgggaagtcaccaattctggttgctactgatgttgca
gctcgtgggcttgatattaaggatataagggtggtaataaattatgatttccccactgga
attgaggactatgtgcaccgtataggaagaactggaagggcaggtgctactggagtgtca
tatacctttttttctgagcaggactggaaacatgcaggtgatttaatcaaagttttggag
ggtgctaatcagcacgtgcttccagagttaaggcagatggctttgcgtgggccatcgaac
tttggaaaggatcggggtggggtgagccggtttgactctggtggtggtggtgggcgttgg
gatactggtggtcgtggtggcatgagggatggtggctttggcggtcgtggaggtggcatg
agggatggtggttttggtggacgtggcggtgggtttgggggacgtggtggtggcatgagg
gatggcagttttggtggacgtggcggtggctttggtggtcgtggtggcataagggatgga
ggtagcgggcaaggtgggagaggtgatttctttcctggtaggggcaacaggggtagagga
tctggtggccctcgtggtgggcatgttggttggggtaggggtgaacgtggtatggatgac
cggtacaacatggatgggcgtggacaaggtcgtggacgtggaaggtttgacaatagaaga
gatgtttcatataaaggtagaggcagaagttatagtcgtagccctgaaagagtcagaaca
tgggattatagcagaagtagcagcagaagtcgtagcagaagtagaagcaggagttggagc
aggggccgtagtcgaagccgcagctggtctcgtggtcgtagtcgtagctatagccgtagt
attagtccacgtcgtaaccgcagtcgtagccgtggtcgtagttacagtcgtagccacagc
cgcagccccagttatgataggcgtaataggtcagatcaacaacttcctgatcaaaaggat
ctcagggcacaggaagtaggaacttcagatccaagaatgcttcccgtgtcttctggttct
ggctcacaagggaattcctttttgggaactgaacaagtagagcagcaacctgttgttagt
agcactgatgcaggtaatccagaagctgtagcagaccttagtcatcaatcagcttctgat
atttag
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