Glycine soja (wild soybean): 114389848
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Entry
114389848 CDS
T06057
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03018
RNA degradation
gsj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114389848
09123 Folding, sorting and degradation
03018 RNA degradation
114389848
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114389848
03041 Spliceosome [BR:
gsj03041
]
114389848
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114389848
mRNA degradation factors
5'-3' decay
Lsm complex
114389848
Spliceosome [BR:
gsj03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
114389848
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
114389848
NCBI-ProteinID:
XP_028206375
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All DBs
Position
16:20775034..20781458
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AA seq
154 aa
AA seq
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MDVVVKDVYGSWCLVLGGDGGVVGYCWDILARVPVEQVDVVGAMGVGRVKEEKGVVWHKI
EKKVPKQSGRKEMVLDLAKFGDKGVQVKLTSGRQVTGTLKGYDQLLNLILDEVVDFLKDP
DDPLKTTDQTRNLGLIVSSPLQHQMSAKIAPSGS
NT seq
465 nt
NT seq
+upstream
nt +downstream
nt
atggatgtcgtagtgaaggatgtgtatgggtcgtggtgtttggttttgggaggagatggt
ggtgtggtaggttattgttgggatattttggcaagagtgccggttgaacaagttgatgtg
gtgggtgccatgggtgttggtcgggtgaaggaggagaagggagttgtgtggcacaagatt
gaaaagaaagtgccaaagcaatcgggcagaaaagaaatggttttggaccttgcaaagttt
ggggacaaaggcgttcaagttaagcttactagtggaagacaagtgacagggactctcaaa
gggtatgatcagttgcttaaccttatcctagatgaagttgtagattttttaaaagatcct
gatgatcctctcaaaactaccgaccagaccagaaatcttggcttaattgtaagttctcct
cttcaacatcaaatgagtgccaagattgcaccttctggctcataa
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