Glycine soja (wild soybean): 114390309
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Entry
114390309 CDS
T06057
Name
(RefSeq) nuclear cap-binding protein subunit 1-like
KO
K12882
nuclear cap-binding protein subunit 1
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03013
Nucleocytoplasmic transport
gsj03015
mRNA surveillance pathway
gsj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114390309
09122 Translation
03013 Nucleocytoplasmic transport
114390309
03015 mRNA surveillance pathway
114390309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114390309
03041 Spliceosome [BR:
gsj03041
]
114390309
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
114390309
Spliceosome [BR:
gsj03041
]
Common components
Common spliceosomal components
Cap binding complex
114390309
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like
MIF4G_like_2
MIF4G
TPR_MLP1_2
Rod_CreS
HMMR_N
CCDC39
Motif
Other DBs
NCBI-GeneID:
114390309
NCBI-ProteinID:
XP_028206814
LinkDB
All DBs
Position
16:4696287..4713002
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AA seq
863 aa
AA seq
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MSSWRSLLLRIGDKSPEYGPSSDYKDHIDTCFGALRRELDHSQSEILEFLLMCAEQLPHK
IPLYGTLIGLINLENEDFVKQLVEKTQSKFQDALDSGNCNGVRILMRLLTVMMSSKVLQP
SSLVAVFETFLSSAATTVDEEKGNPLWQPCADFYITCILSCLPWGGAELTEQVPEDIERV
MVGVEAYLSIRKHTSDTGLSFFENDDENGEGLSDKDFLEDLWDRIQVLSSNGWKVDSVPR
PHLSFEAQLVAGKSHEFGPICCPSLPSLPSVPSGVSIGKQKHEAELKYPQSIHRLNIFPP
SKIEDLQPIDRFVMEEYLLDVLLFLNGCRKECASFMVGLPVSFRYEYLMAETIFSQLLML
PQPPFKPVYYTLVIIDLCKALPGAFPAVVAGAVRTLFERIADLDMECRTRLILWFSHHLS
NFQFIWPWEEWAYVLDLPRWAPQRVFVQEVLEREVRLSYWDKVKQSIENAPGLEELLPPK
GGPNFSFGAEDDKESNEHVLSGQLNNMVKGKAPVREIISWIDESVLPNNGLEVTLRVVVQ
TLLNIGSKSFTHLMTVLERYGQVFAKLCPDQDKQVMLIAEVSSFWKSNTQMTAIAIDRMM
GYRLVSNLAIVRWVFSAENIEQFHMSDRPWEILRNAVSKTHNRISDLRKEILSLKKNISS
SEEAAKEAKAELDAAESKLTLVDGEPVIGDNPARLNRLKSHAEKTKEEVVSLQESLEAKE
ALLSRAIEENEALFLLLYKSFSNVLTERLPEGSRTLHELKSAQVDVVMAVDPEEPSSMEL
DNQNQRPQNSHTNGEKKGGAYNVGEKEQWCITTLGYVKAFSRQYAAEIWPHVEKLDAEVL
TEDAPLLFRSAVYSGLRRPIHEA
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atgagcagttggagaagccttcttctgcgaatcggggacaagagccccgaatatggaccc
tcctccgattacaaagatcacattgatacgtgctttggcgcccttcgccgcgagctcgac
cactcccaatccgagattctcgagttccttctcatgtgtgctgagcaattgcctcacaag
attcctctgtatggtaccctgattggcttaattaacttggaaaatgaagactttgtgaaa
caactagtggagaaaactcaaagtaaatttcaggatgccttagattctggaaactgcaac
ggggttcgtattctaatgcggcttttgactgttatgatgagcagtaaggttcttcaacca
agctctttggtggctgtgttcgaaacatttttatcatcagctgccacaacagtagatgag
gagaaagggaatcccttatggcagccatgtgctgacttttacataacttgcattttatca
tgcctcccatggggtggagcagaacttactgagcaagttcctgaagatatcgagagagtg
atggttggtgtagaagcttacttgagcatcagaaagcatacatcagatactggtttatcc
ttttttgagaatgatgatgaaaatggggaaggtcttagtgacaaggactttttggaagat
ttatgggatagaatacaggttttatcaagcaatggatggaaggttgacagcgttccaaga
cctcatctttcatttgaagcccagctggttgctgggaagtctcatgaatttgggccaata
tgctgccccagcttaccaagcctgccttcagtcccttctggcgtgtctattggtaaacag
aagcatgaagcagaattaaaatatcctcaaagtatacaccggcttaacatatttcctcct
agtaaaattgaggatctacagcctatagacagatttgttatggaagagtatctcctagat
gtgcttctgttcttaaatggctgtcgaaaggaatgtgcttctttcatggttggcctgcca
gtttccttcagatacgagtacctcatggcggaaacaatattctctcagctgctgatgcta
ccacaaccacctttcaaaccagtatattacacattggttattattgacctttgtaaggct
cttcctggagcctttcctgcagttgtagctggagcagttcgtactctctttgagaggatt
gctgatttggatatggagtgtcggacgcgtctgatcctttggttctcacaccatttatca
aacttccagttcatctggccatgggaagagtgggcttatgtcctagacctcccaaggtgg
gcccctcaacgtgtctttgttcaagaggttttggagagggaagttcgcttgtcatactgg
gacaaagttaagcagagtattgaaaatgcacctggtttagaagaattgcttcctccaaag
ggtgggccgaactttagttttggtgcagaagatgataaagaaagcaatgaacatgtactg
tctggacagctcaacaacatggttaaaggaaaggcacctgtccgtgaaataatctcatgg
attgatgaaagtgtgcttccaaataatggtctagaagttaccctcagagtggttgtacaa
actcttctcaatattggatccaagagtttcactcatttgatgactgtcttagagagatat
gggcaagtctttgcaaaattatgtcctgaccaggataagcaagtcatgctgatagctgaa
gtgagttctttctggaagagtaatacccaaatgacagcaatagctattgacaggatgatg
ggttatcggcttgtttcaaatctggctattgtgagatgggtcttctcagcagagaatatt
gagcaatttcatatgtcagatcgtccttgggagattcttagaaatgcagtaagcaagaca
cacaatcgtatttctgatctaaggaaagaaatattatctcttaaaaagaatatttcatca
tctgaagaagctgccaaggaagcaaaagcagagttagatgctgcagagtcaaaacttaca
ctagtggatggtgaaccagttattggcgacaatcctgctaggttgaatagattgaaatca
catgctgaaaagacaaaggaggaggtggtgtctcttcaagaatctttagaagccaaggaa
gctcttctttcccgagcaattgaggaaaatgaggcattgtttctcttgttgtacaaaagc
ttctcaaacgtgttgacagagcgccttcctgaaggatctagaacactgcatgagttgaag
tctgcacaagttgatgtggtgatggcagtggaccctgaagagccatcgtcaatggaatta
gacaaccagaatcagagacctcaaaacagtcatacaaatggcgagaagaaaggtggtgct
tataatgtaggtgaaaaggagcagtggtgtatcaccactttgggctatgtgaaggccttc
tctaggcagtatgctgctgagatatggccccatgttgagaagttggatgcagaggtattg
acagaagatgcacctcttctttttcggtcagctgtttattctggtcttcgaagaccaatt
cacgaggcttga
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