Glycine soja (wild soybean): 114390524
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Entry
114390524 CDS
T06057
Name
(RefSeq) polyribonucleotide nucleotidyltransferase 1, chloroplastic-like
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114390524
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114390524
03016 Transfer RNA biogenesis [BR:
gsj03016
]
114390524
Enzymes [BR:
gsj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
114390524
Messenger RNA biogenesis [BR:
gsj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
114390524
Transfer RNA biogenesis [BR:
gsj03016
]
Prokaryotic type
tRNA degradation factors
114390524
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
OB_RRP5_4th
Motif
Other DBs
NCBI-GeneID:
114390524
NCBI-ProteinID:
XP_028207073
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All DBs
Position
16:3358378..3385968
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AA seq
917 aa
AA seq
DB search
MLACPSSSLHGLATLQRHSQPSHFLLSKPLFFPRFHASRKCNFRSLLSGNNRRRSAVRAS
ADSPEVSESVVGADGGGLQPYSVKIPVGDRHILVETGSIGRQASGSVTVTDGETIVYTTV
CLDDVPCEPSDFFPLSVIYQERFSAAGRTSGGFFKREGKIKDHEVLICRLIDRPLRPTMP
KGFYHETQILSWVLSYDGLHSPDSLAITAAGIAVALSEVPMSKAVAGVRVGLVGDKYIVN
PTTEEMEHSELDLLLAGTDSAILMIEGYSSFLPEEKLLKAVEVGQDAVRAICNEVEALVK
KCGKPKMLDAIKLPPPELYEHVEAIAGDELVKVLQIRNKIPRRKALSSLEEKVLKILTEN
GFVSNDSTLRSNSETIAEILEVEDEDEEVIVDGEVDEGDVHIKPTPRKPALLFSEVDVKL
VFKEITSKYWRKRIVEGGKRSDGRTPDGIRPINSRCGLLPRAHGSTLFTRGETQALAVVT
LGDKQMAQRIDTLDGVDEFKRFYLQYSFPPSCVGEAGRIGAPSRREIGHGMLAERSLAPI
LPSEDDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGIAMGMVLDTKE
FGGDGTPLILSDITGSEDASGDMDFKVAGNGDGITAFQMDIKVGGITLPIMRKALLQARD
GRKHILGAMMNSSPPPAKMLSKYAPLIHVMKVRPDRINLIIGSGGKKVKSIIEESGVDTI
DTEDDGTVKIFAKDLPSLEKSKAIINSLTMVPTIGDIYRNCEIKSIASYGVFVEIAPGRE
GLCHISELSSGWLPKAEDVFKVGDRIDVKLIEVNEKGQLRLSHRALLPDTEASPKDGLVE
EKTEQSKDKSSTPNVTASSKRSSEDDSVLPSKKFVRRLVSSSQDKPFTNKDKRKKSSNKA
VGSVSGEDESSLVSGEA
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atgctagcatgtcctagcagctccctccatggcctcgccacgctccaacgccattcccaa
ccatctcacttcctcctctccaagcctctcttcttccctcgcttccacgcttcccgcaaa
tgcaacttccgctctctcctttccggcaacaaccgtcgccgctccgccgtcagagcctcc
gcggactcgccggaggtgtcggagtccgtcgtcggtgccgacggtggaggcttgcaaccg
tattccgtgaagattcccgttggtgatagacatattttggttgaaaccggttctatagga
agacaagcaagtggctctgttacagttacagatggagaaactattgtgtacacaactgtt
tgcttggatgatgttccttgtgaaccatctgactttttccctctttctgttatttatcaa
gagcgtttttcagcagctggtcgcactagtggaggtttttttaagcgagaaggaaagata
aaagatcatgaggttcttatttgtagattgattgataggcctctacgtcctacaatgcca
aagggtttctatcatgaaactcaaatattatcttgggttttgagctatgatggattgcac
tcccctgattctttggctatcactgcagctggtatagcagttgcactttcagaagtacca
atgtcaaaagcagttgctggagttcgtgttggtcttgttggtgataagtatatagtaaat
cctacgactgaggagatggaacactctgagttggacctcttgctggctggcacagatagt
gcaatattgatgatagagggctatagcagttttctcccagaagagaagttacttaaagct
gtagaagttggtcaggatgcagtgcgagcaatctgtaatgaggtagaagccttggttaag
aagtgtgggaagccaaagatgttggatgccattaagttgcctcctcccgaactttatgaa
catgttgaagcaattgctggtgatgagttagtaaaagttcttcaaattagaaacaaaata
cccagaaggaaagccctttcatcattagaagaaaaggttctgaagatactcacagaaaat
gggtttgtctcaaatgattcaacactgaggagtaattctgagaccattgcggagattctt
gaggttgaggatgaagacgaggaagtaattgttgatggtgaagttgacgaaggtgatgtt
catataaagccaactccacgtaaaccagcccttttattttctgaggtggatgtgaagttg
gtatttaaggaaattacttcgaaatattggaggaagcgcatagtagagggggggaaaagg
agtgatgggcgaacacctgacggaatacgtccaattaactcgagatgtggcctattacct
agagcacatggaagtactctttttacaagaggcgagacacaggcactagcagttgttaca
cttggagataaacaaatggcgcaaagaattgacacccttgatggtgttgatgaattcaag
aggttctatctgcagtattcatttcctccttcatgtgttggggaagctggccggattggt
gccccaagtagaagagaaattggtcatgggatgcttgctgagagatcccttgcaccaatt
ttgccttctgaagatgatttcccttacactatacgtgttgagagtactatcactgaaagc
aatggctcttcaagcatggcttctgtttgtggaggttgcttagcattgcaagatgctggg
gttcctattaagtgttctattgctggaattgcaatgggtatggtactggacaccaaggaa
tttggtggagatggaactccacttattctgtctgacataactggatctgaagatgcgtct
ggagatatggatttcaaggttgctggaaatggagatggcataactgcatttcaaatggac
attaaggtgggtggaattactttgcccatcatgagaaaggcacttctacaagcaagagat
ggcaggaagcatatacttggagcaatgatgaattcctcacctcctccagcaaaaatgctt
tccaagtatgctcctctgattcatgttatgaaggtaagaccggatagaataaatcttata
attggttctggtgggaaaaaagtgaagagcattattgaggaatctggagtagacactatt
gatacagaagatgatggcactgtgaaaatatttgcaaaagatttacctagtttagagaag
tctaaagctattattaatagtttgacgatggttccaactattggtgatatatataggaac
tgtgaaatcaaatcaatagcctcatatggagtttttgtagagatagcacctggacgagag
ggactatgtcatatcagtgaactgagttcaggttggctacccaaggcagaagatgttttt
aaagtgggagatcgcattgatgtaaagcttatagaggtaaatgaaaaggggcagctgcgc
cttagtcaccgagcactgcttcctgatacagaagcttcaccaaaagatggtttagtggaa
gaaaagactgaacagtctaaggataagtctagcactcccaatgtcacagcctcttctaaa
agaagttcagaggatgattctgtacttccttctaaaaagtttgtcaggagattggtaagc
tcttcccaggataagcctttcactaacaaagacaagagaaagaagagtagcaacaaagca
gttggtagtgtgtctggcgaagatgaaagcagtttggttagtggagaagcctaa
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