Glycine soja (wild soybean): 114390734
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Entry
114390734 CDS
T06057
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114390734
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114390734
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114390734
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
114390734
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
114390734
NCBI-ProteinID:
XP_028207402
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Position
16:complement(3914832..3925769)
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AA seq
883 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVEVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVGELESQIDSFEAELEGLSVKKGKTRPPRLTHLETSITRHKA
HIKKCEFILRLLDNDELSPEEVNDVKDFLDDYVERNQDDFDEFDDVDELYSSLPLDKVET
LEDLVTIPPGLSKVAPSLSLKNTLTVSASQSASASQTSDTSVQEQADDTESQDSNSDIVA
KTPPPKSGGISSATSTPVGNHATPVSVNISGHNLSGAPVAALPSSNSVRNVLENTNVTNS
SSVNQSTSTKEEDINSFPSRRPSPSLSDATLLRDRNSLSNQATASVPLGSGNMVSSNVAL
GSVSSASEIAKRNIMGADDRLGSSGMVQPLVSPLSNRLILPQAAKANDGIVSVDSSTVNE
AAAGRVFSPSGVPGMQWRPGSPFQNQNDAGQLRGRTEIAPDQREKFLQKYQQVQQGHSTL
LNMPSLVGGNHKQFSAQQQNPLLQQFNSHGSSVSSQSGIGLGVQSTSLGGISSASLQQPP
NPVHSPSSQQPLMPDVGNSKIEEQQQHQNFPDDSTIESIASTGIGKNLINEDDSKSAYTV
DSPAAVSASLPESAQTSRDIDLSPGQPLQSNQLTGNLGVIGRRNGAEHGAIGDNFSGSNV
SSGGVRDQLYNLQMLEAAHFKIPLPKDSERPRTYTPKHPAITPPSYPQVQAPIVNNPAFW
ERVGLEPFGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVATDE
YEQGTYVYFDFHIANDDMQHGWCQRIKTEFTFEYNYLEDDLLV
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcgagtagaaaactccagggagagatagatcgcgttctcaagaaggttcaggaa
ggcgttgaagtcttcgatagcatctggaacaaggtttacgacactgacaatgctaaccag
aaggagaaatttgaagcggacctcaagaaggagattaagaagctccagaggtacagagac
caaattaagacttggattcagtccagtgagatcaaagacaaaaaggttagtgcctcatat
gagcaggctttggtggatgcacgcaagctaattgagcgggaaatggaaagatttaagata
tgtgagaaggaaactaagaccaaagcattctccaaagaaggcttgggtcaacagcctaag
actgatccaaaagagaaggctaaatcagagacaagggattggttaaacaatgtggttgga
gagttagaatcccaaattgatagctttgaagcagagcttgaagggctttctgttaagaaa
ggaaagaccaggccacccagattgacacatctagagacatcaattactcggcacaaggct
catataaaaaaatgtgaattcattttgaggctactagataatgatgaattaagtcctgag
gaggttaatgatgtcaaagatttcttggatgactatgttgagcgtaatcaggatgatttt
gatgaatttgatgacgttgatgaactatacagttcattacctttagataaggtggagact
ctagaagatcttgttacaattccccctggtctttctaaggtggcacctagtcttagcttg
aagaatactttgacagtatcagcatcacaatcagcatctgcatcgcaaacatctgatact
tctgtccaggagcaagctgatgacacagagtcccaggatagcaattctgacattgttgcc
aaaactccacctcctaaaagtgggggaattagttctgctacttcaactcctgttggcaac
catgcaactcctgtttccgtgaatatttctggtcataacttgtctggtgcacctgttgca
gccctacctagttcaaattctgtgcggaatgtcttagagaatactaatgttaccaattca
tcatctgtaaatcagtctacctctacaaaggaagaagatattaatagcttccctagccgg
agaccgtctccatcactttctgatgcaacacttttgagggacagaaacagcctatcaaat
caagcaacagccagcgttcctcttggttctggaaacatggtttctagcaatgtggccctt
ggatcagtctcttcagcctctgaaatagctaaaaggaacataatgggagctgatgataga
cttggaagtagtgggatggtgcagcctcttgtatccccgctaagtaatagattgatcttg
cctcaggctgcaaaggctaatgatggaattgtttcagttgactctagtactgttaatgaa
gccgcagccgggagagttttctccccttctggggttcctggcatgcaatggagacctgga
agtccctttcagaatcagaatgatgcaggccagcttcgtggaagaactgaaatagctcct
gatcaaagggaaaagtttttgcagaagtatcagcaagtgcaacaagggcatagtaccctt
cttaatatgccttctcttgttgggggaaaccataagcagttttctgcccagcagcaaaat
ccccttttgcagcagtttaactctcatggctcatctgtttcttctcaatctggtattgga
cttggggtccagtccacaagtcttggtggtatttcttctgcttcactacagcagccaccc
aatcctgtccattccccctctagtcaacagccattgatgccagatgttggcaattctaag
attgaagaacagcagcagcatcagaatttccctgatgattcaacaatagaatctattgct
agcactgggattggcaagaatctcataaatgaagatgattcaaaatcagcatatactgta
gattctcctgcagcagtgtctgcctctcttccagaatctgctcaaacttccagggatatt
gatttgtctcctggccaaccattacaatctaatcaactaactggcaaccttggtgtcatt
ggaagaagaaatggtgctgagcatggagccattggtgataattttagtgggtcgaatgtt
agttctggtggagtgcgtgatcaattatataatttgcaaatgcttgaggcagcccacttc
aaaattccactacccaaagactcggaacgtcccaggacttacactcctaagcacccagca
attacacctcccagctatcctcaagtacaggcacctattgttaataatcctgctttttgg
gagagggttggtcttgaaccatttggtactgatactctgttctttgcattttattatcaa
cagaatacttaccaacaatatttggctgcaaaggagttaaagaagcagtcttggagatac
caccgaaagtataacacatggtttcagcggcatgaagagcccaaagttgcaaccgatgaa
tatgagcagggaacttatgtgtactttgatttccatattgcaaatgatgacatgcaacat
ggatggtgtcaaagaatcaagactgaattcacttttgagtataattatcttgaagatgat
cttcttgtatag
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