KEGG   Glycine soja (wild soybean): 114390737
Entry
114390737         CDS       T06057                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein-like
  KO
K12857  Prp8 binding protein
Organism
gsj  Glycine soja (wild soybean)
Pathway
gsj03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:gsj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    114390737
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:gsj03041]
    114390737
Spliceosome [BR:gsj03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    114390737
 Complex C
   U5 SnRNP specific factors
    114390737
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_EML_2 WDR55 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 WD40_WDHD1_1st EIF3I WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_WDR75_1st NBCH_WD40 WD40_MABP1-WDR62_1st ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_SPT8 Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_DCAF4 Beta-prop_IFT140_1st Beta-prop_WDR35_TULP_N WD40_RFWD3 Beta-prop_WDR19_1st eIF2A Beta-prop_HPS5 Beta-prop_WDR75_2nd Beta-prop_RIG_1st Beta-prop_DCAF12 Beta-prop_NWD2_C Beta-prop_Nup120_160 PEP5_VPS11_N Nbas_N
Other DBs
NCBI-GeneID: 114390737
NCBI-ProteinID: XP_028207407
LinkDB
Position
16:complement(3514114..3518127)
AA seq 345 aa
MQVFSIEGESALSVVGPRPMEWSTVPYNAPQAPGPNGKQRTSSLESPIMLLSGHQSAIYT
MKFNPAGSVIASGSHDREIFLWNVHGDCKNFMVLKGHKNAVLDLHWTTDGTQIVSASPDK
TVRAWDVETGKQIKKMVEHLSYVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGSIQTFP
DKYQITAVGFSDASDKIFTGGIDNDVKIWDLRKGEVTMTLQGHQDMITDMQLSPDGSYLL
TNGMDCKLCIWDMRPYAPQNRCVKVLEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYI
WDTTSRRILYKLPGHNGSVNECVFHPNEPIIGSCSSDKQIYLGEI
NT seq 1038 nt   +upstreamnt  +downstreamnt
atgcaagttttttccattgaaggcgaaagtgctttgtcagttgttggtccaaggccaatg
gaatggtctactgttccatacaatgcccctcaagctcctgggccaaatggaaagcagcgg
acctcaagtttggaatcaccgatcatgttgctgtcaggtcaccagagtgctatatatacc
atgaagttcaatccagcaggatcagtcattgcatctggatctcatgacagggaaattttc
ctctggaatgtgcatggggattgcaagaacttcatggttctgaaaggtcacaagaatgct
gttttagatctccactggactactgatgggacacaaatagtctctgccagccccgacaaa
acagtgagggcatgggatgtggaaacaggaaaacaaatcaaaaagatggtagaacatctc
tcttatgttaattcatgttgtccttctcgaaggggaccacctcttgttgttagtggctct
gatgatggaactgctaaattatgggatatgcgtcaaaggggttccatccaaacattccca
gataaataccagattaccgctgttggcttctcagatgcatcagataagatcttcactggt
ggtattgacaatgatgtcaagatttgggatttgcgtaaaggtgaagttaccatgacactt
caaggtcatcaagacatgattactgatatgcagctgagtcctgatgggtcctaccttctt
acaaatggcatggattgcaaactttgcatttgggatatgcgtccgtatgctccgcaaaat
cgctgtgtgaaggtgttggaagggcatcaacacaactttgaaaagaacttattgaagtgc
ggttggtctcctgatggaagcaaggtaacagctggtagttctgatcgaatggtttacatc
tgggataccacttctcgccgcatcttgtataagcttcccggtcacaatggatctgttaac
gagtgtgtttttcatcccaatgagcctattattggatcttgtagcagtgacaagcagatt
tatctaggggagatatga

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