Glycine soja (wild soybean): 114391167
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Entry
114391167 CDS
T06057
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2-like
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114391167
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114391167
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
114391167
U7-dependent histone pre-mRNA processing factors
114391167
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
Beta-Casp
CPSF100_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
MBL_MAP1B
BPS
Motif
Other DBs
NCBI-GeneID:
114391167
NCBI-ProteinID:
XP_028207979
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Position
16:35252668..35264977
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AA seq
738 aa
AA seq
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MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLVDCGWNDHFDPSLLQPLARVASTIDAVLL
SHADTLHLGALPYAMKQLGLSAPVYSTEPVYRLGLLTMYDQYLSRKQVSEFDLFTLDDID
SSFQSVTRLTYSQNHHFSGKGEGIVIAPHVAGHLLGGTIWKITKDGEDVIYAVDFNHRKE
RHLNGTVLGSFVRPAVLITDAYNALNNQPYRRQNDKEFGDILKKTLREGGNVLLPVDTVG
RVLELILMLESYWTDENLNYPIYFLTYVASSTIDYVKSFLEWMSDTIAKSFEKTRENIFL
LKYVTLLINKTELDNAPDGPKVVLASMASLEAGFSHEIFVEWANDVKNLVLFTERGQFAT
LARMLQADPPPKAVKVVVSKRVALVGEELIAYEEEQNRIKKEALKASLMKEEEFKTSHGA
DNNTSDSMVIDSGNNHVPPEVSGPRGGGYRDIFIDGFVPPLTSVAPMFPCYENTSEWDDF
GEVINPDDYVIKDEDMDQTAMHGGDINGKLDEGAASLILDTKPSKVVSDERTVQVRCSLV
YMDFEGRSDGRSIKNILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYAPQLEETID
VTSDLCAYKVLLSEKLMSNVLFKKLGDYELAWVDAVVGKTENDPLSLLPVSGAAPPHKSV
LVGDLKLADIKQFLSSKGVQVEFAGGALRCGEYVTLRKVGDASQKGGGSGAQQIVIEGPL
CEDYYKIRDYLYSQFYLL
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atgggaacatcggtgcaggtaacgccactgtgtggagtgtacaatgagaaccctctctcg
tatttggtttccattgatggcttcaacttcctcgtcgactgtggctggaacgaccacttc
gacccttccctccttcaacccctcgccagggtagcatcaaccatagatgctgttttgctt
tcacatgcggatacacttcatcttggtgcccttccatatgccatgaagcagcttggactc
tctgccccggtttattcaacggagcctgtctacagattgggccttctcactatgtatgac
cagtacctctcaagaaagcaagtgtcggagttcgatctgttcacgctggatgatattgat
tcttctttccagagtgtaacgaggctaacatattctcagaatcatcatttctcaggcaag
ggagaaggaatcgtgattgcacctcatgttgctggacatcttttgggaggtactatttgg
aaaattacaaaggatggcgaggatgtcatatatgctgttgattttaatcataggaaagaa
aggcatttgaatggaactgttctaggttcttttgtgcgtccagctgttctaataactgat
gcttacaatgctttgaacaatcagccttacagacgtcaaaatgacaaagaatttggagat
atcttaaagaagactctaagggaaggtggcaatgtattattacctgttgacactgttgga
cgagtgttggaacttattctgatgttggaatcgtattggactgatgaaaacttgaactat
cctatatactttcttacatatgttgcatccagcacaattgattatgtgaagagtttcctt
gagtggatgagtgataccatagcaaagtctttcgaaaaaactcgtgaaaatatatttctt
ttgaagtatgtcacccttcttattaacaagactgagcttgacaatgctccagatggtcca
aaggttgttctagcatctatggcaagtttggaagcaggcttttctcatgagatatttgtt
gagtgggccaatgatgtaaaaaatcttgtcctttttactgaaagaggccagtttgccaca
ctagctcgtatgcttcaagctgatccacctccaaaagctgtcaaagtcgttgtgtccaag
cgtgttgctttggttggtgaagagctaatagcctatgaagaagagcaaaatcgaataaaa
aaagaagctttaaaagctagtcttatgaaggaggaagaatttaaaacatctcatggggct
gataataatactagtgattcaatggtcattgattctggcaataatcatgtaccacctgaa
gtgtctggtcccagaggcggaggataccgggacatatttattgatggatttgttccccct
ttgacaagtgttgctccaatgtttccctgttatgagaatacatcagagtgggatgatttt
ggagaggtcataaatccagatgattatgtaattaaggatgaagacatggaccagacagca
atgcatggaggtgatataaatggaaaactagatgaaggtgctgcaagtttgatactcgat
acaaagccatcaaaagttgtatctgacgaaaggactgtgcaagtcaggtgctcattggtt
tacatggattttgaaggacgttcagatggaagatccattaaaaatattctatctcatgtg
gctcccttgaagctggttttggtgcatggatcagctgaagctacagagcatctgaagcag
cactgcctgaagcatgtttgtccacatgtttatgctccccaattggaagagacaattgat
gtcacctctgatttatgtgcttacaaggttctactgtccgagaagctcatgagtaatgta
ctcttcaaaaagctaggagattatgaattagcttgggttgatgctgtagtagggaagaca
gaaaatgacccgctttcgctgctccctgtttctggagccgctcctccgcataaatctgtt
cttgttggtgatttgaaattggcggatatcaaacagtttctctccagcaagggtgttcag
gtggaatttgctggtggggctttgcgttgtggtgaatatgtaactctacggaaagttggg
gatgcaagtcagaagggtggtggttctggtgctcaacaaatagttattgagggtcctctg
tgtgaagattactataaaattcgtgactatctgtattcgcagttttatttgctttag
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