KEGG   Glycine soja (wild soybean): 114393068
Entry
114393068         CDS       T06057                                 
Name
(RefSeq) histone deacetylase 6-like
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
gsj  Glycine soja (wild soybean)
Pathway
gsj03082  ATP-dependent chromatin remodeling
gsj03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:gsj00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    114393068
   03083 Polycomb repressive complex
    114393068
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:gsj03036]
    114393068
Enzymes [BR:gsj01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     114393068
Chromosome and associated proteins [BR:gsj03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     114393068
   HDAC complexes
    Sin3A-HDAC complex
     114393068
    BRAF-HDAC complex
     114393068
    REST complex
     114393068
    SHIP complex
     114393068
    MiDAC complex
     114393068
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     114393068
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    114393068
  Chromatin remodeling factors
   NuRD complex
    114393068
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 114393068
NCBI-ProteinID: XP_028210131
LinkDB
Position
17:6639274..6643118
AA seq 472 aa
MGMEEESSIIEGGASLPSSGSDAKKRRVTYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIV
HYSLHRRMEINRPFPASPADIRRFHSDDYVDFLSSVSPETLADSAFSRHLKRFNVGEDCP
VFDGLFPFCQASAGGSLGAAVKLNRADADIAINWAGGLHHAKKSEASGFCYVNDIVLGIL
ELLKAHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHVKDIGVGSGKN
YAVNVPLNDGMDDESFRSLFRSIIQKVMEVYQPEAVVLQCGADSLSGDRLGCFNLSVRGH
ADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDY
TLYVDPSNMENLNTSKDLEKLRNTLLEQISRLPHAPSVPFQTTPPTLQLPEEAEENMDRR
PKLRKWDGEDYDSDPEEGGKDNSKFSNITAHMRDIADEMEEEKPEEHPSSCS
NT seq 1419 nt   +upstreamnt  +downstreamnt
atgggaatggaagaggagagtagcatcatagaaggtggtgcttcgcttccatcgtcgggt
tcagacgccaagaagcgaagagtgacctacttctacgagcccaccatcggcgattactac
tacggtcaggggcacccaatgaagccgcaccgaatccgcatggcgcacaacctcatcgtc
cactactccctccaccgccgcatggagatcaaccgccccttcccggcctcccccgccgac
atccgccgcttccactccgacgactacgtcgacttcctctcctccgtctcccccgagacc
ctcgccgattccgccttctctcgtcacctcaagcgcttcaacgtcggcgaggactgcccc
gtcttcgacggcctcttccccttctgccaggcctccgccggtggctcccttggcgccgcc
gtcaaactcaaccgcgctgacgccgacatcgccatcaattgggccggcggcctccatcat
gccaagaagtctgaggcctctggattctgctacgtcaacgacattgtcctcggcatcctc
gaacttctcaaggctcacaggcgtgtgctgtatgttgacattgatgttcaccatggtgat
ggtgttgaggaggccttttacaccactgatagagtgatgacagtgtctttccacaagttt
ggggactttttccctggcacagggcacgtcaaagacattggggtgggctcaggaaagaat
tatgcagtaaatgtcccattaaatgatggaatggatgatgagagtttccgtagtctgttt
cgatccatcattcaaaaagtcatggaggtttatcaacctgaggcagttgttctacaatgt
ggagctgattcattgtctggtgacagattgggttgcttcaacttgtctgtgagaggtcat
gcagattgccttcgttttcttagatcgttcaatgttcctttaatggtcttgggtgggggt
ggatatacaattcggaatgttgcccgttgttggtgttatgagacagcagtggcagtagga
gtggagcctgataataagttgccttataatgaatattatgaatattttggcccagattat
actctctatgtcgatccaagcaacatggagaacctaaacacatccaaggatttggaaaaa
ttaaggaacacactactagaacagatttcccgacttccacatgctcccagtgtacctttt
cagacaacaccacctaccttgcaacttccggaagaggcggaagagaacatggatagaaga
ccaaaacttcgcaaatgggatggtgaagattatgattctgatcccgaagaaggtggaaag
gataattccaagttctcaaacatcactgcccatatgagggacattgcagatgaaatggaa
gaagagaagccagaagagcatccatcatcttgtagttga

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