Glycine soja (wild soybean): 114393325
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Entry
114393325 CDS
T06057
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 30-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114393325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gsj03041
]
114393325
03009 Ribosome biogenesis [BR:
gsj03009
]
114393325
Enzymes [BR:
gsj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
114393325
Spliceosome [BR:
gsj03041
]
Complex A
U1 snRNP components
U1 related factors
114393325
Complex B
114393325
Ribosome biogenesis [BR:
gsj03009
]
Eukaryotic type
Pre-60S particles
Helicases
114393325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HAD_Pex22
Motif
Other DBs
NCBI-GeneID:
114393325
NCBI-ProteinID:
XP_028210418
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All DBs
Position
17:6590399..6595664
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AA seq
602 aa
AA seq
DB search
MNPYDNRYSDAASFRGRRSDFVGPIPPPSFVGRGGAVPYGVPGPNGFGSAPVAPVPPFVP
PSGGFNVGRGGGRAGNGPVSDRKHDMGRGRGGGGGGRAGAHGFRGSARGGGRHGGGSSRD
DLNNIALPKQDFKNLVPFEKNFYVECPAVRAMSEQEVLHYRASREITVQGNDVPKPIMMF
HEANFPDYCLEVIANLRFADPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHV
NAQPRLAHGDGPIVLVLAPTRELAVQIQEEALKFGSRANKRSTCIYGGAPKGPQIRELKR
GVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQTL
LWSATWPRDVETLARQFLHNPYKVIIGSPYLKANQSINQIVEVVTDMEKYNRLIRLLKEV
MDGSRILIFMETKKGCDQVTRQMRVDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTAT
DVAARGLDVKDIKCVINYDFPTSLEDYVHRIGRTGRAGAKGTAYTFFTHANAKFARDLIK
ILQDAGQTVSPALTALVRSAGSGQFGSGGGFRSRGRGGYGNRGLTSGSNAIPLGSKRPWH
CL
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgaacccctacgacaatagatattccgacgccgcttcttttcgcggccgtcgcagtgat
ttcgttggacctattccgcctccgtctttcgtcggccgcggcggcgcagttccctacggc
gtccccggacccaacgggttcggatccgcacccgttgctccggtaccaccctttgtgcct
ccttccggaggcttcaacgtaggtcgaggcggtggcagagcgggcaatggtcccgtgagt
gatagaaaacacgacatgggtcgtggccgtggtggcggcggcggtggtagagccggagct
cacggttttaggggctccgcgagaggaggaggtagacacggtggtggttcttctagggat
gatttgaacaacattgcactcccgaagcaggattttaagaatttggtcccttttgagaag
aacttctatgttgagtgccctgccgtgagggccatgtctgagcaagaagttttgcattac
cgtgccagtagagagatcaccgtgcaaggcaacgatgtgccaaagcctattatgatgttt
cacgaggcgaattttcctgattactgccttgaggttattgccaatctgcgttttgctgat
cccactccaattcaagctcagggttggcccatggctctgaagggtagagatttaattggc
attgccgagactggctcgggtaaaactttggcgtatttgcttcctgctttagtgcacgtc
aatgcacaacctcgattggcacatggggatggtcccattgtcttagttttagcaccaact
agagagttggctgttcaaattcaggaagaggctcttaaatttgggtctcgggcaaataaa
agaagtacgtgcatctatggtggtgcaccaaagggtccccaaattcgggagcttaaaaga
ggcgtcgaaatagttattgctacacctggtcgtctaatagatatgttggaagctcagcac
acgaacctgcggagagtgacttaccttgtcttagatgaagctgatcgaatgctagacatg
ggttttgaacctcagatacggaaaattgtagcccagattcgaccagataggcaaacatta
ttatggagtgctacatggccaagggatgttgaaactctggcaaggcagtttctgcacaac
ccatacaaggtaattattgggtcaccatacctgaaggcaaatcaatctataaatcaaatt
gttgaagttgtaacagacatggagaaatacaatagattaatcagactgctgaaagaagtg
atggatggtagccgaattttaatatttatggagacaaaaaagggatgtgatcaagttacg
agacaaatgagagtggatggatggccagcactatccatccatggtgataaaaaccaggct
gaaagggattgggtcttggctgaatttaagagtggcagaagtccaataatgactgccact
gatgttgctgcacggggtcttgatgtgaaagacataaaatgtgtgatcaattatgatttt
ccaacaagcctggaagattatgtccacagaattggtcgaactggtcgtgcaggggctaaa
ggaactgcatacaccttttttacacatgccaatgctaagtttgctagggatctgattaag
attttacaagatgctggtcagactgtgagtcctgcgttgactgcattggttcggtcagct
ggttctggtcaatttggatcagggggaggttttcgctcaagaggacgaggaggctatgga
aatcgtggtttaacgtcaggttccaatgccattcctctaggttcgaagcggccctggcat
tgtctatag
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