Glycine soja (wild soybean): 114393500
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Entry
114393500 CDS
T06057
Name
(RefSeq) ATP-dependent RNA helicase dbp8-like
KO
K03257
translation initiation factor 4A
Organism
gsj
Glycine soja (wild soybean)
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114393500
03012 Translation factors [BR:
gsj03012
]
114393500
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gsj04147
]
114393500
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
114393500
mRNA cycle factors
Stress granule specific factors
114393500
Translation factors [BR:
gsj03012
]
Eukaryotic type
Initiation factors
eIF-4
114393500
Exosome [BR:
gsj04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
114393500
Exosomal proteins of bladder cancer cells
114393500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Beta-prop_WDR5
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_Prp19
WD40
WD40_WDHD1_1st
Beta-prop_WDR41
EIF3I
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR3_2nd
Beta-prop_CAF1B_HIR1
ResIII
WD40_CDC20-Fz
WD40_Gbeta
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_EML
DUF2780
Beta-prop_IFT122_1st
Beta-prop_ACSF4
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
CMS1
AAA_22
Motif
Other DBs
NCBI-GeneID:
114393500
NCBI-ProteinID:
XP_028210658
LinkDB
All DBs
Position
17:4039261..4049823
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AA seq
854 aa
AA seq
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MCGDATNWDEDAYRETILKEREIQTRTVFRTAWAPPYTSNLDTLILASSDGSVASYSISS
SIAASKIKNPFGFVNADTDELLAEPNCFVQAHDGPAYDVRFYGDGEDALLLSCGDDGRIR
GWRWNEFSSSNYSVSSQGNDIKPVLDVVNPQHKGPWGALSPIPENNAIAVNTQGGSVFAA
SGDSCAYCWDVETGKVKMVFKGHMDYLHCIVARNSLDQIITGSEDGTTRIWDCKSGKCTQ
VIDPARDLKLKGSASWVGCVALDASESWLACSSGRNISLWNLPASECISKIPTRACVQDM
LFDNNQILTVGTDPLLNRFDMNGTILSQIQCAPSSSFSISLHPAGVMAVGGYGCLVDVIS
QFGSHMCTFHCQSWFLFITSLSLTHTHILASLSLRSAPAKRSSLSFSRLRGVDPRSSGNP
NSSSFTTEQRFFSLSIISTEVMAGLAPEGSQFDARQYDSKMSDLLSSDGQDFFTSYDEVY
DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGIL
QQLDYSLTQCQALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILSSGV
HVVVGTPGRVFDMLRRQSLQPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVF
SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLAI
TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL
ARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDEKMLFDIQKFYN
VQVEELPSNVAELL
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atgtgcggtgacgccacgaactgggacgaagacgcatacagagaaaccattctcaaggag
agggaaatccaaacccgaaccgttttccgaaccgcttgggccccaccctacacctctaac
ctcgacactctcatccttgcctctagcgacggttccgtcgcatcctactccatctcttcc
tccatcgccgcctctaagataaaaaatccattcggtttcgtcaatgccgatacagatgag
ttgttggctgaaccaaattgcttcgttcaagcgcacgatggacctgcttacgatgtcaga
ttttatggtgatggcgaagatgctctgttgctgagctgtggtgatgatggtcggattcga
ggatggagatggaacgaattttcaagctcaaattattctgtttcttcccaaggaaatgat
atcaagcctgtacttgatgtggtgaatccccaacacaaaggtccttggggtgcgctttca
cctatccctgagaataatgctattgctgtcaatactcaggggggatctgtttttgctgca
tctggcgattcttgtgcatattgttgggatgtggaaactggtaaagtgaaaatggtattc
aaggggcacatggactatttgcattgtatagttgctcgcaactcattagatcagatcata
acaggttcggaggatgggacgactcgaatttgggattgcaaaagtggaaagtgtacgcaa
gtgattgatccagcaagagatttgaaattaaagggatctgcttcttgggttggctgtgtt
gctttagatgcaagtgaaagctggttggcttgcagtagtggacgtaatatatcactttgg
aaccttcctgcttcagaatgcatatcaaagattcctacccgtgcttgtgtacaagacatg
ttatttgacaataatcaaattttgacagttggtacagatcctctactcaatcgctttgac
atgaacggcactatcctttcacaaatacagtgtgctccttcgtcatctttttctatctcc
ttacatcctgcaggggttatggcagttggaggttatggatgtcttgttgatgttatctca
caatttggcagccacatgtgcacgtttcattgccagtcctggtttttatttatcacttct
ctctctctcacacacacacacatactcgcttccctctctctgcgttcggcaccagcgaaa
cgctcttcgttatctttttctcgactccgcggcgtagatccgaggagttcgggaaaccct
aactcatcttccttcacaacagaacaacgcttcttttccctatccatcatctcaactgaa
gtcatggctggactagcacctgaggggtcacagttcgatgctcgtcaatatgattccaaa
atgagtgacttactttcatctgatggacaggacttcttcacatcctatgacgaggtttat
gatagttttgacgctatgggtttgcaggagaatcttctcaggggaatttacgcatacggt
tttgagaagccatcagccattcagcaaagggggatagttcccttctgcaagggacttgat
gttattcaacaggctcaatctggaactgggaagacggccactttctgctctggtattctg
cagcaacttgactatagcttgactcaatgccaggccttggttttggcaccaactcgtgag
cttgctcagcagattgagaaagttatgcgggcacttggagattatcaaggtgtgaaggtt
catgcttgtgtgggaggtaccagtgtgcgtgaggaccagcgcattctatctagtggtgtt
catgttgtggttggtacccctggtcgtgtgtttgatatgctgcgccgacagtcacttcag
ccagaccacatcaagatgtttgtattggatgaggctgatgaaatgctttcccgaggtttc
aaggatcagatctacgatatatttcagctgcttccatctaagattcaagtgggagttttc
tctgccacaatgcctcctgaggcccttgagatcaccaggaagtttatgaacaaacctgtg
aggatccttgtgaagcgtgatgagctcaccttggagggtattaagcaattttatgtcaat
gttgaaaaggaggaatggaagctggacacactctgcgatctttatgagacattagctatc
actcagagtgtcatttttgttaacaccagaaggaaagttgattggttgactgacaagatg
agaagccgtgaccacacagtctcagcaacccacggagacatggaccagaataccagggac
attattatgcgtgaattccgttctgggtcttcccgtgtcttgataaccactgatcttttg
gctcgtggtattgatgtccaacaagtgtctctagttataaattttgatctcccaacacag
cctgagaactatctccatcgtattggtcgtagtgggaggttcggaaggaagggtgttgcg
atcaactttgtcacaaaggatgacgagaaaatgctgtttgacatccagaagttttacaac
gtgcaagttgaggagctgccttcaaatgttgctgagctcctttga
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