Glycine soja (wild soybean): 114393536
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Entry
114393536 CDS
T06057
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
114393536
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gsj03400
]
114393536
DNA repair and recombination proteins [BR:
gsj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
114393536
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
Serine_rich
Motif
Other DBs
NCBI-GeneID:
114393536
NCBI-ProteinID:
XP_028210690
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Position
17:complement(9688791..9700334)
Genome browser
AA seq
942 aa
AA seq
DB search
MAENFDDLNNKLPELKLDSKQAQGFLSFFKTLPDDPRAVRFFDRRDYYTAHGENATFIAK
TYYHTTTAMRQLGSGSNALSSVSVSRNMFETIARDLLLERTDHTLELYEGSGSNWRLVKS
GTPGNIGSFEDVLFANSEMQDSPVVVALSLNYRENGCTIGLGFVDLTKRVLGMAEFLDDS
HFTNVESAFVALGCKECILPIESGKSTENRMLCDVLTKCGVMLTEKKKSEFKTRDLVQDL
GRLVKGPIEPVRDLVSGFEFAPGALGALLSYAELLADESNYENYTLRSYNLDSYMRLDSA
AMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHVWLKQPLVDVKEINSRLDIVQA
FVEDTALRQDLRQHLKRISDIERLMHNIQKRRAGLQHIVKLYQSSIRLPYIKSALERYDG
QFSTMMRSRYLEPIELWTDDEHLNKFIGLVEASVDLDQLENREYMISPSYDSILANLKDQ
QELLESQIQNLHRQTADDLDLPMDKALKLDKGTQFGHVFRITKKEEPKIRKKLNTQFIIL
ETRKDGVKFTNTKLKKLGDQYQQILEEYKSCQKKLVDRVVQTAATFSEVFESLAEIISEL
DVLLSFADLASSCPTPYTRPDITSSDEGDITLEGCRHPCVEAQDWVNFIPNDCKLVRGKT
WFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDNASISVRDCIFARVGAGDCQLRGV
STFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHIVEVIKAPTLFAT
HFHELTALALENVSNDSQKQIVGVANYHVSAHIDSSTRKLTMLYKVEPGACDQSFGIHVA
EFANFPESVVTLAREKAAELEDFSPSATSLNHTTQEVGSKRKRAFEPDDMSQGAAKARQF
LEAFVALPLETMDKMQALQEVKKLTDTLEKDAENCNWLQQFL
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaaacttcgacgacctaaataataaactccctgagctcaaattagattctaag
caagcgcaagggtttctgtcatttttcaaaaccctacctgatgatccaagggctgtacgg
ttttttgatcgccgggactattatactgcccatggtgagaatgctacattcattgcaaag
acctattaccacactactacagctatgcgacaactgggcagtggatcaaatgctctttcc
agtgtaagtgtcagcaggaacatgtttgaaacaattgctcgtgatctccttttggagaga
acagaccatactcttgagctctatgaaggtagtggttctaattggagactggtcaaaagt
ggaacacctggtaatattggcagttttgaagatgttctgtttgctaacagtgaaatgcaa
gattctccagttgttgttgctttgtcacttaactatcgggaaaatgggtgcaccattggg
ttaggatttgttgatctaactaagagagtacttgggatggctgaattccttgatgacagt
cacttcacgaatgtggagtcagcatttgttgcacttgggtgcaaagagtgcattctgcct
atagagtctggcaaatctactgaaaatagaatgttgtgtgatgtgttgactaaatgtggt
gtgatgttaactgagaaaaagaaatctgaatttaaaactagggatctggtacaggatctt
ggcaggcttgttaaaggtcctattgaaccagttcgagatttagtgtctggatttgaattt
gcacctggtgctttaggggcattactatcttatgcagagttactggcagatgaaagcaat
tatgaaaattatactctgcgtagttacaatcttgacagctacatgaggttagactctgca
gccatgagagcacttaatgtcctggaaagcaaaactgatgcaaacaaaaatttcagtttg
tttggtctcatgaataggacttgtactgctggaatgggaaaacggttattgcacgtctgg
ctaaaacaaccattagtagatgtaaaagaaattaattccaggttggacatagttcaagca
tttgtagaggacactgctcttcgccaagatctgaggcagcatctgaaaagaatatcagac
attgagcgattgatgcacaatattcagaagcgacgagctggtctgcaacatattgttaaa
ctttatcagtcaagtattagactaccttacatcaaaagtgctttggaaagatatgatgga
caattttccacaatgatgaggagtaggtatctggaacctattgagttatggactgatgat
gagcacctgaacaaattcattgggcttgtagaagcttctgttgaccttgatcaactggag
aatagggaatacatgatttctccaagctatgactctatactagctaacctaaaggaccaa
caagaattactagagagccaaatacaaaacttgcatagacaaactgctgatgatcttgat
ctgcctatggacaaggcattaaagttagacaagggcacacaatttggacatgttttcaga
atcacaaagaaggaagagccaaaaataaggaagaagctcaatactcagtttattatactg
gaaacccgtaaagatggagtgaaatttaccaacacgaagctcaagaaactaggggaccaa
tatcaacaaattcttgaggagtataaaagttgtcaaaaaaagttagttgatagagtagtt
caaactgcggcaactttctctgaggtgtttgaatctttagctgaaataatttctgaattg
gatgtattactgagctttgctgatttggcttctagttgtcctactccctacacaaggcct
gacatcacttcatcggacgaaggagatattactttagaaggatgcagacacccttgtgta
gaggcacaagactgggtgaattttataccaaatgattgtaagcttgtcagaggaaaaact
tggtttcaaataataacaggacctaacatgggtgggaaatcaacatttatccgacaggtg
ggtgttaatattttgatggcacaagttggttcctttgttccttgtgacaatgccagcata
tctgtccgtgattgcatttttgcccgtgttggtgctggtgactgtcaacttcgtggagtt
tctacctttatgcaagaaatgcttgaaactgcatcaatattaaagggagctactgacaag
tccttgataatcattgatgagttgggacgtgggacatcaacttatgatggatttggttta
gcttgggccatttgtgagcatattgttgaagtaatcaaagcacctactttgtttgccacc
cactttcacgaattgactgcattagcccttgaaaatgtaagcaatgattcacagaagcaa
attgttggtgtggcaaactatcatgttagtgcacatattgactcatcaactcgaaagcta
accatgctatacaaggttgaacctggagcttgtgatcagagtttcggtattcatgttgcc
gagtttgcaaacttccctgaaagtgttgttaccctagctagagaaaaggcagcagaatta
gaagacttttctccttctgcaacatccttaaatcatactacacaggaggtaggttctaaa
cgtaagagagcatttgaacccgatgacatgtctcaaggggctgcaaaggctcgccaattt
ctagaagcatttgttgctttgcctctagaaaccatggacaaaatgcaagctttgcaagaa
gtaaagaagttaacagatactttggagaaggatgcagaaaactgtaattggctgcaacag
ttcttgtag
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