Glycine soja (wild soybean): 114393719
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Entry
114393719 CDS
T06057
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114393719
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114393719
03012 Translation factors [BR:
gsj03012
]
114393719
Enzymes [BR:
gsj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114393719
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
114393719
Translation factors [BR:
gsj03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
114393719
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
T2SSE
Rad17
NACHT
ATPase
ABC_tran
BEX
Motif
Other DBs
NCBI-GeneID:
114393719
NCBI-ProteinID:
XP_028210938
LinkDB
All DBs
Position
2:39084366..39094401
Genome browser
AA seq
1039 aa
AA seq
DB search
MPRCLYRPTFYYSHTHLPLTFLHPPAPELSPTHLRISSSVMAYRPNYRGGGGSGASSSAA
RGGSRRGGGGGRGGGSGGRGGRGEQRWWDPVWRAERLRQQQAEKEVLDENEWWDKIEKMK
RGGEQEMVIKRNFSIADQKTLADIAYQHELYFHAYSKGKVLIVSKVPLPDYRADLDERHG
STQKEIKMSTDIERRVGNLLNSSQSTGATLSSLPSISADLGQKQSAAPIKYVSSRQTDSS
KEKLSVALKERQELVQASDSLKEMKSFREKLPAFKMKSEFLKAVQENQVLVVSGETGCGK
TTQLPQFLLEEEISCLRGADCNIICTQPRRVSAISVAARISAERGESLGEAVGYQIRLES
KRSAETRLLFCTTGVLLRQLVQDPDLTGVSHLLVDEIHERGMNEDFLIIILRDLLPRRPD
LRLILMSATINADMFSKYFANAPTMHILGFTYPVAEHFLEDVLEKTRYSIKSDFDNFEGN
SRRRRKQQDSKKDPLTEMFEDIDVDTNYKNYSLGVRKSLEAWSGSQIDLGLVEATIEYIC
RNEAGGAILVFLTGWDEISKLLDKLKGNNLVGDPSKFLILPLHGSMPTVNQCEIFERPPP
NKRKIVLATNIAESSITIDDVVYVIDWGKAKETSYDALNKLACLLPSWISKASAHQRRGR
AGRVQPGVCYRLYPKLIHDAMPQYQLAEILRTPLQELCLHIKSLQLGTVGSFLEKALQPP
DPLAVKNAIELLKTIGALDEQEELTPLGQHLCNIPLDPNIGKMLLMGSIFQCLNPALTIA
ASLAYRNPFVLPINRKEEADAAKQFFAGDSCSDHIALLKAFEGWKEAKRSGNEKQFCWDN
FLSPATLRLIDDMRMQFLNLLSDIGFVDKSRGANVYNQYSHDLEMVCAILCAGLYPNVVQ
CKRRGKRTAFYTKEVGKVDIHPASVNAGIYLFPLPYMVYSEKVKTTSIYIRDSTNISDYA
LLLFGGNLVPSKSGEGIDMLGGYLHFSASKSVIELIRKLRGELDKLLNRKIEEPGFDVSA
EGKGVVAAAVELLHSQVMR
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgctgtctctaccgccctactttctactactcccatactcatctccctctcacc
ttcctacacccgcccgcacccgagctttcccccactcaccttcggatctcctcctccgtc
atggcctaccgccccaactaccgaggcggcggcggcagtggagcctcctcctccgccgct
cgcggcggcagccgccgtggtggcggtggtggacgtggcggtggcagcggaggacgcggt
ggacgcggcgagcagaggtggtgggaccctgtttggcgcgccgagcgcctgaggcaacaa
caagctgagaaggaggtgttggatgagaatgagtggtgggataagatagagaagatgaag
agaggaggggagcaggagatggtaattaagcgtaactttagtattgcagaccagaaaacc
ctagctgatattgcctatcagcatgagctctacttccatgcttatagtaaggggaaggtt
ctcattgttagcaaagttccattgcctgattatcgtgcagatcttgatgagcgtcatgga
tcaacacagaaagagattaaaatgtccacagacattgagagaagggtaggaaatcttttg
aatagctcacagtcaactggggcaacactgtctagtcttccttctatatcagctgacctt
ggacaaaaacaatctgcagcccctataaaatatgtttcttcacgacagactgattcttct
aaggagaaacttagtgttgcactcaaggaaaggcaagaacttgtacaggcaagtgatagt
ttgaaggaaatgaaatcatttagggagaagcttcctgcatttaaaatgaagtctgagttt
ctgaaagctgttcaagaaaatcaggtattagtagtttcaggagagacaggttgtggtaaa
acaacacagttgccacaattccttctggaagaagaaatatcttgtttgcgcggagctgat
tgcaacataatttgtactcagcctcgtcgagtatctgcaatttctgttgcagctcgaata
tctgctgaaagaggtgagagtcttggggaagcagttggataccaaatccgtcttgaatca
aaacgttctgcagaaacacgccttcttttctgcaccactggtgtattacttcggcagttg
gtacaagacccagacttgactggtgttagtcatttgctggtggatgaaattcatgaaaga
ggcatgaatgaagactttttaattataattttacgtgaccttcttcctaggcgtccagat
ttgcgtctcattctgatgagtgccaccattaatgctgatatgttctctaaatactttgca
aatgccccaacaatgcacatactgggatttacttaccctgtggcagagcacttcctggaa
gatgtgttggagaaaactcgatacagcatcaagtcagattttgacaattttgaggggaat
tcaaggaggagaaggaaacaacaggattcaaagaaggatcctttgactgaaatgtttgag
gatattgatgtagatactaattacaaaaattacagcttgggtgttagaaaatctctagaa
gcttggtcaggttcgcagattgatttgggtttggtagaggcaacaattgagtatatatgt
cgcaatgaagctggtggagcaattcttgtatttctcactggctgggatgaaatttctaaa
ctgcttgacaaacttaaaggaaataacttagttggagaccctagcaagttcttaatcctt
cctttacatggctcaatgcctactgtcaaccaatgtgaaatatttgaacgtcctccccct
aacaagagaaaaatcgtgctagcaacaaatattgctgagagtagcatcaccatagatgac
gttgtgtatgtcatagactggggaaaagcaaaggagaccagctatgatgctctaaataag
cttgcttgcttgttgccatcatggatttcaaaggcttcagctcatcagagacgtggtcgt
gctggtcgagtgcaacctggagtttgctataggttgtatccaaaactgatccatgatgca
atgcctcaatatcagttagctgaaatccttcgaacacctttgcaagagttgtgccttcat
attaaaagtttgcagcttgggactgtaggatcatttttagaaaaggcacttcagccacca
gatcctttagctgttaagaatgctattgaacttctcaaaacaattggggcgttagatgaa
caggaagagctcactccacttggtcagcatctttgtaacatacctttggacccaaatata
gggaagatgcttctcatgggctctatctttcagtgcttaaatcctgccttaactattgct
gcctctcttgcttaccgcaacccatttgtcttacccataaacagaaaagaggaagccgat
gcagcaaaacaattttttgctggtgattcttgcagtgatcacatagcccttctcaaagct
tttgaaggatggaaggaggcaaagcgaagtgggaacgaaaagcagttttgttgggataat
ttcctttcccctgcaaccttgcggttgattgacgatatgagaatgcagtttctcaattta
ttatctgacattggatttgttgacaagtccaggggtgctaatgtttacaaccagtatagt
catgatttggagatggtttgtgcaattctttgtgctgggctctaccctaatgttgttcag
tgcaaaagaagaggaaaacggacagcattctacactaaagaagtagggaaggttgacatc
catcctgcttctgttaatgctgggatctatctcttccctcttccctacatggtgtatagt
gaaaaggtgaaaactaccagcatctatattagagactctacgaacatttcagattatgcc
ctacttctatttggtggtaatcttgtccctagcaaaagtggtgagggcattgacatgctt
ggaggttaccttcatttctctgcttcgaaaagtgtcatcgagttaataaggaaactacgt
ggggagcttgacaagcttctgaacagaaaaattgaagaaccaggatttgacgtttctgct
gaaggaaagggagtggttgctgctgctgttgaattgctgcacagtcaagtcatgagataa
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