Glycine soja (wild soybean): 114395541
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Entry
114395541 CDS
T06057
Name
(RefSeq) THO complex subunit 4D-like
KO
K12881
THO complex subunit 4
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03013
Nucleocytoplasmic transport
gsj03015
mRNA surveillance pathway
gsj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114395541
09122 Translation
03013 Nucleocytoplasmic transport
114395541
03015 mRNA surveillance pathway
114395541
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114395541
03041 Spliceosome [BR:
gsj03041
]
114395541
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
114395541
TREX complex
114395541
Spliceosome [BR:
gsj03041
]
Complex C
Other components
EJC/TREX
114395541
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
114395541
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
Motif
Other DBs
NCBI-GeneID:
114395541
NCBI-ProteinID:
XP_028213149
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Position
18:3401682..3406919
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AA seq
298 aa
AA seq
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MASSLDMSLDDRIKNRSNRGRGRGGRGRAHSGRGPSGALNGGRMAGAVSSRRMAGASNGG
RTTGAVRRGPLMVNTRPSSYAIAKSIRRARPFPWQHDLFEDSLRAAGIQGVEVGTKLYVS
NLDHGVTNEDIRELFSELGELKRFAVHYDKNGHPSGSAEVVYTRRSDAFAALKRYNNVLL
DGKPMKIEIVGSNSELPISARVNVTGVNGRRKRTVVMTPRGGQAGGGPTMPNRGAGRGRR
GGPRSGSGRGGGGGRGRGRGSRGGGGGRGRGRKDAVEKSAEELDKELETYHAEAMNIS
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
atggcttcttccttggatatgtcgcttgatgatagaataaagaacagaagtaacagaggg
agaggtagaggaggacgtggtagagcccattctggccgtggaccaagtggcgctcttaat
ggtggaagaatggctggtgctgttagtagtagaagaatggctggtgctagtaatggtgga
agaacaactggtgctgttcgtagaggtcctcttatggttaacactcggccgtcatcgtat
gctattgccaagtctattcgcagagctaggccctttccatggcagcatgatttgtttgaa
gatagcttaagagctgctgggattcaaggagtagaagttggcaccaagttgtatgtttcc
aatttggaccatggagtgaccaatgaagacataagggaacttttctctgagcttggagag
ttgaagcgttttgctgttcattatgacaaaaatggacatccaagtggttcagctgaagtc
gtttatactagaagaagtgatgcatttgctgctcttaaacgatataataatgtacttttg
gatggaaagcccatgaagattgagattgttggttccaattcagaattgcctataagtgct
cgggtgaatgtcactggggtgaatgggcgcaggaagaggactgttgtaatgacgcctaga
ggtggccaagctggaggtggtcctactatgcctaatcgtggtgctggtcggggacgtcga
ggtggcccaaggagtggcagtggacgtggtggaggtggtggtcgaggccgtggtcgcggc
agcaggggtggtggtggaggtagaggtcgtggaagaaaggatgctgttgagaagtcagcg
gaggaacttgacaaggagctggagacctatcatgctgaagccatgaacatctcttga
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