Glycine soja (wild soybean): 114395596
Help
Entry
114395596 CDS
T06057
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03440
Homologous recombination
gsj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
114395596
03450 Non-homologous end-joining
114395596
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gsj03032
]
114395596
03400 DNA repair and recombination proteins [BR:
gsj03400
]
114395596
DNA replication proteins [BR:
gsj03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
114395596
DNA repair and recombination proteins [BR:
gsj03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
114395596
BRCA1-C complex
114395596
NHEJ (non-homologous end-joining)
MRX complex
114395596
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_15
AAA_21
SbcC_Walker_B
SMC_N
Rad50_zn_hook
AAA_29
ABC_tran
AAA_16
AAA_22
Motif
Other DBs
NCBI-GeneID:
114395596
NCBI-ProteinID:
XP_028213220
LinkDB
All DBs
Position
18:208578..219618
Genome browser
AA seq
1316 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPENKNVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNAR
SGHSFIHDPKVAGETETKGQIKLRFKTAAGKDVVCVRSFQLTQKASKMEYKAIESVLQTI
NPHTGEKVCLSYRCADMDKEIPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKEQAQEIKTYKLKLENLQTLKDAAYKLRESIAQDQEKTESAEC
QLQQLDGSIQELDHKIHHTEETLKYLRKLQEQISTKTAQRSILFKEQQKQYLALTEEIED
TDEELMEWKTKFEERIASLETKISRLERETEDIDCTSSTLKETIAESIEVIAKLQAEAEA
HMSFKNERDSSIHNLFTTYNLGSLPKSPFSAEVALNLTNRVKSRLEDLEKDLDDKKKAND
NEIKMAFDCYMNANDRLKHTEAKIKAMTGSKSGISKRIEEKKNELDSLELQISDENFSQL
DERERNLENEVKRKASQLDERQFEPNKCEVEKEIYSVDQKIKAVSREKDIMVSDSQDRVK
LSYKKGELESQKKKHKKIIDEQKDKIRKVLKGRVPLDKDVKKEIMQALRAVGAEFDDLNA
KYREAEKEVNVLQVKIQEVNSNLSKHHKDLESRKRYIESKLQSLDQQCSGIDSYLKVLES
AKEKRDVQRSKYNIADGMRQMFDPFERVARANHVCPCCERPFSPEEEDSFVKKQRVKATS
SAGHMKVLAVESSNAESHFQQLDKLRMLYEEYVKLGKETIPNSEKELQQLKEEMDDKSQA
LDDVLGVLAQVKSDKDLVETLVQPVENADRIFQEIQALQKQVEDLEDKHNFRAQGVRTLE
EIQLELNTLQSTKENLQSELDRLKDEQRYMEKDLSSIQMRWHTVREEKTKATNILQGVKR
LEEELERLTEEKTQVDLDEKHLADALGPLSKETDKLLANHNELKIRLEREYEDLAEQKRS
YQQEAQALFKMNSKIKTYSDLKKGDRLKELQEKKSSSESQLQSFDTRKQEILAELNKSKD
LMRGQDQLKRNIEDNLNYRKTKAEVDELAHEIETMEENILKAGRISTVETELQKLSQERE
RLLSELNRCRGTMSVYQSNISKNKVDLKQAQYKDIDKRYFDQLIQLKTTEMANKDLDRYY
SALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYISIHSDSEGAGTRSYSYKVLMQT
GDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALV
RIMEDRKGQENFQLIVITHDERFAQLIGQRQHAERYYRVAKDDHQHSIIESQEIFD
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgagtactgttgataaaatgttgatcaagggcatccggagcttcgacccggagaacaag
aacgtcatcaccttcttcaagcccttaaccctaatcgttggccccaatggtgctggcaag
acaaccatcattgagtgcttgaagctttcctgcaccggcgagttgccacctaacgctagg
tctggccacagcttcatccacgacccaaaggttgcgggggaaaccgaaacaaagggtcag
attaagctccgtttcaaaacggccgccggtaaagacgtggtctgcgtaaggtcctttcag
ctcacacagaaggcctccaagatggaatacaaggctatcgaaagtgtgcttcaaactatt
aatcctcacactggcgagaaagtttgcctcagctatcgatgcgctgacatggataaagag
attcctgccctcatgggcgtctccaaggccattctcgaaaatgttatattcgttcatcaa
gatgaagccaactggcctctccaggatccttctaccttaaagaaaaagttcgacgatatc
ttttccgctaccagatacaccaaggcactcgaagttataaagaaacttcacaaggagcag
gctcaagagattaagacttacaagctcaaactggaaaatcttcagactctcaaagatgct
gcttacaagcttcgggaaagcattgcacaggatcaagagaaaacagagtctgcagaatgt
caactgcaacagttggatggcagcattcaagaattggatcataaaattcatcacacggag
gaaacattgaaatatttgcggaagctgcaggagcagatatcaactaaaactgctcaacga
agcatcctgtttaaggaacaacagaaacaatatctagctctcactgaggagattgaagac
accgatgaagagttgatggaatggaagaccaagtttgaagaaaggattgcaagtttagaa
acaaaaataagcaggttggaaagagaaacggaggacattgactgtacaagttctaccctt
aaggagaccattgctgaatccatcgaagtgattgccaagctacaagctgaagcagaagct
cacatgtcattcaagaatgaacgtgattcctccattcacaatcttttcactacatataac
ttgggatctcttccaaagtcacctttcagtgctgaggttgctttaaacctcactaatcgt
gtaaaatcaaggttggaagatcttgagaaggacctggatgataaaaagaaggcaaatgac
aatgaaatcaagatggcatttgattgctacatgaatgcaaatgaccgtttgaaacatact
gaggctaaaataaaggctatgacagggagcaagagtggcatttcgaagcgtattgaagag
aagaaaaatgagcttgattcacttgaacttcaaatatctgatgaaaacttctctcaatta
gatgaaagagaaagaaatttggaaaatgaggttaagaggaaggcaagccaactcgacgaa
agacaatttgaaccaaataaatgtgaagtggaaaaggagatatatagtgtagatcaaaag
attaaggctgtcagtcgagagaaggatatcatggtttctgattcacaggacagagttaag
ctatcttataagaagggagagttggaaagtcagaagaagaaacataaaaagataattgat
gaacaaaaggacaaaataagaaaggtgctgaaagggagggttcctcttgataaggatgtg
aagaaggaaattatgcaagcattaagggctgttggagctgaatttgatgacctgaatgca
aagtaccgtgaagctgagaaggaagtcaatgtgttgcaggtgaaaatacaagaagttaat
agtaacctatccaaacaccacaaggatttggaatcaagaaagagatatattgaatctaag
cttcagtctttggaccagcaatgttctggaattgattcttatctcaaagttttagagtct
gccaaggagaaaagagatgtccaaagaagcaaatataatattgctgatggtatgcggcaa
atgtttgatccttttgaaagggttgcaagagctaatcatgtttgcccttgctgtgagcgt
cctttttctccagaagaagaagacagttttgtcaaaaagcaaagagtgaaggctaccagt
tcagctggacatatgaaagttctcgccgtagaatcctcaaatgcagagtctcattttcag
caattggacaagcttcgtatgctttatgaagaatatgttaaacttggcaaggaaacaatc
cctaattccgaaaaggaacttcagcaacttaaagaagagatggatgacaaatctcaggct
cttgatgatgttttaggcgttttagcacaagtaaaatctgacaaggatttggttgagaca
ttggtgcaacctgttgaaaatgctgaccggattttccaagaaattcaagctttacaaaag
caagttgaggatttagaagataagcataattttcgagcacagggagtgaggactctagaa
gagattcaattggagcttaacacattgcagagcacgaaggagaatttgcaatctgaattg
gatcggttgaaggatgaacagaggtatatggagaaggatctatcaagtattcaaatgcgg
tggcacactgtaagggaggaaaaaacaaaggcaactaacatattgcaaggtgttaaaaga
ttagaagaagaattggaacgtttaactgaagaaaagacccaagttgatctcgacgagaag
catttggcagatgctcttggacctttatccaaggagacagacaaattacttgctaaccat
aatgaactgaaaattagactcgagcgtgagtatgaggacctggctgaacagaagagaagt
tatcaacaagaagctcaagcactttttaaaatgaattctaagatcaaaacgtattctgat
ttaaagaaaggagacaggctaaaggaactgcaggaaaagaaatcttcatcagaatctcaa
cttcaaagttttgatacaaggaagcaggaaattttagctgaactaaacaaaagtaaagat
ttgatgcgaggtcaagatcaactaaaaagaaatattgaggacaacttaaattaccggaaa
acaaaggctgaagtagatgagctagcacatgaaattgaaacaatggaagaaaatatattg
aaggctggtaggatttccacagttgaaactgaactccagaaactatcacaggagagggag
agacttctttcagagttaaacaggtgccgtggaacaatgtctgtttaccaaagcaatatt
tccaaaaataaggttgatcttaagcaggctcaatacaaggacatagataagcgatacttt
gaccaacttatccagcttaagacaactgaaatggccaacaaggatctagacagatactac
agtgcacttgataaagcactgatgcgcttccacacaatgaaaatggaagaaatcaacaaa
attataagggaattgtggcagcaaacctatagaggacaagatatagactacatcagtatt
cattcagactccgaaggtgcagggacccgttcctacagttacaaggttctcatgcagact
ggtgatgcagagttggagatgagaggaagatgtagtgcaggtcagaaggttctggcctct
cttatcatacggttggctttagctgaaacgttttgtctcaattgtggaatacttgcactg
gacgaacctaccacaaatttggatggaccaaatgctgaaagtctagctgcagctctcgta
aggatcatggaggacaggaaagggcaggaaaattttcagctaattgtaatcactcatgat
gagcgttttgctcaactgatagggcagcgccagcatgcagagagatattatcgtgtcgcc
aaagatgaccatcagcacagtataatcgaaagccaggagatatttgactga
DBGET
integrated database retrieval system
