KEGG   Glycine soja (wild soybean): 114396798
Entry
114396798         CDS       T06057                                 
Name
(RefSeq) THO complex subunit 3-like
  KO
K12880  THO complex subunit 3
Organism
gsj  Glycine soja (wild soybean)
Pathway
gsj03013  Nucleocytoplasmic transport
gsj03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:gsj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    114396798
  09122 Translation
   03013 Nucleocytoplasmic transport
    114396798
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gsj03019]
    114396798
   03041 Spliceosome [BR:gsj03041]
    114396798
Messenger RNA biogenesis [BR:gsj03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     114396798
Spliceosome [BR:gsj03041]
 Complex C
  Other components
   EJC/TREX
    114396798
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    114396798
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_CDC20-Fz WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_WDR3_1st Beta-prop_EML_2 ANAPC4_WD40 EIF3I Beta-prop_CAF1B_HIR1 WD40_Gbeta WDR55 Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd Beta-prop_WDR3_2nd Beta-prop_WDR19_1st Beta-prop_RIG_2nd Beta-prop_NOL10_N Beta-prop_WDR36-Utp21_1st Beta-prop_Aladin Beta-prop_TEP1_C DSE1_N WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_Vps41 Beta-prop_WDR75_1st eIF2A Beta-prop_WDR35_TULP_N Beta-prop_EIPR1 NBCH_WD40 WD40_RFWD3 Beta-prop_EML Beta-prop_IFT140_1st Beta-prop_HPS5 WD40_MABP1-WDR62_1st Tricorn_2nd Beta-prop_DCAF12 TRM82_WD WDR90_beta-prop_4th Beta-prop_IFT80_2nd PAC11 Beta-prop_WDR41 Beta-prop_Nup120_160 TP_0598_N DUF7099 WD_LRWD1 Beta-prop_ACSF4 Beta-prop_WDR11_1st CNH
Other DBs
NCBI-GeneID: 114396798
NCBI-ProteinID: XP_028214769
LinkDB
Position
18:6617198..6621650
AA seq 313 aa
MEEQIPFKNLHNREYSGHKKKVHSVAWNCIGTKLASGSVDQTARIWHIEPHGHGKVKDIE
LKGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGT
HVAVGNRDDELTILDVRKFKPIHRRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLSYPSL
RPLDTLMAHTAGCYCIAIDPVGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIGF
NYTGDFIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKHQA
DEGVFRIFGFKNA
NT seq 942 nt   +upstreamnt  +downstreamnt
atggaggaacaaatcccatttaagaatctccataacagagagtattcgggtcacaagaag
aaggtgcactccgtggcttggaattgcattggcacaaaacttgcttctggttctgtggat
caaactgcgcgaatatggcatattgagccacatgggcatggcaaggtcaaagatattgaa
ttgaaaggtcacactgatagtgtcgatcagctatgctgggaccccaaacatgctgatttg
attgcaactgcatcgggtgacaagactgttcgtttgtgggatgctcgaagtggaaaatgc
tctcaacaggcagaacttagtggagagaatatcaacatcacttacaaacctgatgggact
catgtagctgttggtaacagggatgatgaattaacaatattggatgttcggaagttcaaa
ccaattcataggcgcaagttcaattatgaggtaaatgagattgcttggaacatgacgggt
gagatgttctttctaacaacaggaaatgggactgtggaagtactttcttacccatctctt
cgacctcttgacactctcatggctcatacagctggttgttattgcatcgcaattgatcca
gtaggaagatattttgctgttggaagtgctgattcccttgtcagtctgtgggatatctca
gagatgctctgcgtgcgtaccttcacaaagctggaatggcctgtccggacaattggcttc
aattacactggagattttattgcttctgcaagtgaagacttgttcattgatatttcaaat
gttcatactggaagaacagtgcatcaaattccttgtagggctgctatgaacagtgttgag
tggaatcctaaatacaatttacttgcatatgctggtgatgacaaaaacaagcatcaggct
gatgaaggtgtttttcgcatttttggttttaaaaatgcttag

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