Glycine soja (wild soybean): 114396798
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Entry
114396798 CDS
T06057
Name
(RefSeq) THO complex subunit 3-like
KO
K12880
THO complex subunit 3
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03013
Nucleocytoplasmic transport
gsj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114396798
09122 Translation
03013 Nucleocytoplasmic transport
114396798
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114396798
03041 Spliceosome [BR:
gsj03041
]
114396798
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
114396798
Spliceosome [BR:
gsj03041
]
Complex C
Other components
EJC/TREX
114396798
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
114396798
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_IFT122_1st
Beta-prop_WDR5
WD40_CDC20-Fz
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_WDR3_1st
Beta-prop_EML_2
ANAPC4_WD40
EIF3I
Beta-prop_CAF1B_HIR1
WD40_Gbeta
WDR55
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR3_2nd
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Beta-prop_NOL10_N
Beta-prop_WDR36-Utp21_1st
Beta-prop_Aladin
Beta-prop_TEP1_C
DSE1_N
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_Vps41
Beta-prop_WDR75_1st
eIF2A
Beta-prop_WDR35_TULP_N
Beta-prop_EIPR1
NBCH_WD40
WD40_RFWD3
Beta-prop_EML
Beta-prop_IFT140_1st
Beta-prop_HPS5
WD40_MABP1-WDR62_1st
Tricorn_2nd
Beta-prop_DCAF12
TRM82_WD
WDR90_beta-prop_4th
Beta-prop_IFT80_2nd
PAC11
Beta-prop_WDR41
Beta-prop_Nup120_160
TP_0598_N
DUF7099
WD_LRWD1
Beta-prop_ACSF4
Beta-prop_WDR11_1st
CNH
Motif
Other DBs
NCBI-GeneID:
114396798
NCBI-ProteinID:
XP_028214769
LinkDB
All DBs
Position
18:6617198..6621650
Genome browser
AA seq
313 aa
AA seq
DB search
MEEQIPFKNLHNREYSGHKKKVHSVAWNCIGTKLASGSVDQTARIWHIEPHGHGKVKDIE
LKGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGT
HVAVGNRDDELTILDVRKFKPIHRRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLSYPSL
RPLDTLMAHTAGCYCIAIDPVGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIGF
NYTGDFIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKHQA
DEGVFRIFGFKNA
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atggaggaacaaatcccatttaagaatctccataacagagagtattcgggtcacaagaag
aaggtgcactccgtggcttggaattgcattggcacaaaacttgcttctggttctgtggat
caaactgcgcgaatatggcatattgagccacatgggcatggcaaggtcaaagatattgaa
ttgaaaggtcacactgatagtgtcgatcagctatgctgggaccccaaacatgctgatttg
attgcaactgcatcgggtgacaagactgttcgtttgtgggatgctcgaagtggaaaatgc
tctcaacaggcagaacttagtggagagaatatcaacatcacttacaaacctgatgggact
catgtagctgttggtaacagggatgatgaattaacaatattggatgttcggaagttcaaa
ccaattcataggcgcaagttcaattatgaggtaaatgagattgcttggaacatgacgggt
gagatgttctttctaacaacaggaaatgggactgtggaagtactttcttacccatctctt
cgacctcttgacactctcatggctcatacagctggttgttattgcatcgcaattgatcca
gtaggaagatattttgctgttggaagtgctgattcccttgtcagtctgtgggatatctca
gagatgctctgcgtgcgtaccttcacaaagctggaatggcctgtccggacaattggcttc
aattacactggagattttattgcttctgcaagtgaagacttgttcattgatatttcaaat
gttcatactggaagaacagtgcatcaaattccttgtagggctgctatgaacagtgttgag
tggaatcctaaatacaatttacttgcatatgctggtgatgacaaaaacaagcatcaggct
gatgaaggtgtttttcgcatttttggttttaaaaatgcttag
DBGET
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