Glycine soja (wild soybean): 114399527
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Entry
114399527 CDS
T06057
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114399527
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gsj03041
]
114399527
03009 Ribosome biogenesis [BR:
gsj03009
]
114399527
Enzymes [BR:
gsj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114399527
Spliceosome [BR:
gsj03041
]
Complex A
U2 snRNP components
U2 related factors
114399527
Complex B
114399527
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
114399527
Ribosome biogenesis [BR:
gsj03009
]
Eukaryotic type
90S particles
Helicases
114399527
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
ResIII
nSTAND3
SRP54
ABC_tran
T2SSE
AAA_30
AAA_7
Flavi_DEAD
FtsK_SpoIIIE
AAA_33
NACHT
PhoH
AAA_29
Motif
Other DBs
NCBI-GeneID:
114399527
NCBI-ProteinID:
XP_028217524
LinkDB
All DBs
Position
19:47090841..47094772
Genome browser
AA seq
721 aa
AA seq
DB search
MGTERKRKVSLFDVVDDSAAKMAKSNGGAAANNLTNHWTARPYSQRYFEILEKRKTLPVW
HQKEEFLQVLKDNQTLILVGETGSGKTTQIPQFVLDAVELETPDKRRKMMVACTQPRRVA
AMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSAKTVLKYLTDGMLLREAMTDPLLERYKVI
ILDEAHERTLATDVLFGLLKEVLKNRPDMKLVVMSATLEAEKFQGYFFGAPLMKVPGRLH
PVEIFYTQEPERDYLEAGIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKITKEISNLGD
QVGPVKVVPLYSTLPPAMQQKIFEPAPPPLKEGGPPGRKIVVSTNIAETSLTIDGIVYVI
DPGFAKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQ
TYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTK
LGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSVSAMLSVPNCFVRPREAQKAADEAKARF
GHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMSRFNLKLCS
TDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVIYN
EYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLSNFPQCEAKRVLERLYKKREKEKEEARSR
R
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgggtacagagagaaagaggaaggtgagcttgtttgatgtggtagacgattctgcggcg
aagatggcgaaatccaatggcggcgccgctgctaataatctcaccaatcattggaccgca
aggccttactcccaaaggtacttcgagattttggagaagagaaagaccctccccgtttgg
caccagaaagaagagtttttgcaagttctcaaagataaccagactttgattctcgtcggt
gaaactggtagtggcaaaaccactcagattcctcagtttgttttggatgctgtcgaatta
gagacaccggataaacgtaggaagatgatggtagcctgcactcagcctcggagagtagct
gcgatgtctgtttcgcgtcgtgtggctgaagagatggatgtaactattggggaagaggtt
ggttacagtatcagatttgaagactgcagtagtgcgaagacggttttgaagtatcttacg
gatggtatgctcttaagagaagcgatgacagatccgcttttggaacggtacaaggttatt
attcttgatgaggcacatgagaggactttggccacggatgtgctatttggccttctgaag
gaagtgcttaaaaatcgacctgacatgaagttggttgttatgagtgcgactcttgaagct
gaaaagtttcagggttattttttcggtgcccctctcatgaaagttcctggaaggctacat
cctgttgaaattttctatacgcaggaacctgaaagggattacttggaggccggcattagg
acagtggtacagatacacatgtgtgagcctccaggagatatacttgtatttctgactgga
gaggaagagatagaagatgcttgccgcaaaataacaaaagaaatttctaatctgggagat
caggtggggcctgtcaaagttgtacccctgtattctactcttcctcctgctatgcagcag
aagatttttgagccagctccacctccactgaaggagggtggacctcctggaaggaagatt
gtggtatcaactaacatagccgaaacttccttaacaattgatggtattgtttatgtcatt
gaccctggttttgctaagcagaaggtttataacccacgaattcgtgtggagtctttatta
gtgtcaccaatatcgaaagctagtgcacatcagagatcaggacgtgctggaagaactcaa
ccagggaaatgctttagactttacactgagaaaagtttcaataatgatcttcagccacag
acctatcctgaaatattgagatcaaatcttgccaacacagttcttactttgaagaaactg
ggtatagacgatctagtgcattttgatttcatggaccctcctgctcccgagaccttaatg
cgtgcattggaagtgttgaattacttgggtgcactggatgacgatggtaacttaactaaa
ctgggtgagattatgagtgaatttcccttggaccctcagatgtcaaagatgctcgttgtc
agtcctgaattcaactgttcaaatgagattctgtcagtttctgccatgctttcagtaccc
aattgctttgtccggcctagggaggcacaaaaagctgcggatgaagctaaagctaggttc
gggcacattgatggagatcatctcactctgttgaatgtctatcatgcgtacaagcaaaat
aatgaggatccctcttggtgctacgataactttgttaatcatagggcattgaaatcagct
gataatgttagacaacaattagtgcgtatcatgtcccggtttaatctgaagctatgcagc
actgactttaatagccgtgactactatgtcaacataagaaaagctatgctagctgggtat
ttcatgcaggtagctcatctggagcgtacaggacactacttgacagtgaaagacaaccag
gtggtgcatttgcatccatccaattgcctggaccacaagcctgaatgggtcatttataat
gaatatgttcttaccagtcggaattttattcgtactgttacagacatacgtggtgaatgg
ttggttgatatagcaccacattactatgatttgtctaatttcccccaatgtgaggcaaaa
cgtgtccttgagagactttacaagaagcgagaaaaggaaaaggaggaagccaggagccgc
agatga
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