Glycine soja (wild soybean): 114399751
Help
Entry
114399751 CDS
T06057
Name
(RefSeq) spliceosome-associated protein 130 A-like isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114399751
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gsj03021
]
114399751
03041 Spliceosome [BR:
gsj03041
]
114399751
03036 Chromosome and associated proteins [BR:
gsj03036
]
114399751
Transcription machinery [BR:
gsj03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
114399751
Spliceosome [BR:
gsj03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
114399751
Complex B
114399751
Complex C
U2 SnRNP specific factors
114399751
Chromosome and associated proteins [BR:
gsj03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
114399751
TFTC complex
114399751
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
114399751
NCBI-ProteinID:
XP_028217768
LinkDB
All DBs
Position
19:46024326..46040613
Genome browser
AA seq
1373 aa
AA seq
DB search
MAVSEEECSSAKSGSSGPSSSSSSASRYYLSKCVFRGSVVLHVLHAHIRSPSSNDVVFGK
ETSIELVVIDEDGNVQSVFDQPVFGTLKDLAILPWNEKFRAARDPQLWGKDLLVATSDSG
KLSLLTFCNEMHRFVPVTHIQLSNPGNQMDFPGRKLAVDSSGCFIAASAYEDRLALFSLS
MSSGDIIDERIVYPSESEGTASTSRSIQRTSISVTIWSICFISQDSRQPSKEHNPVLALI
INRREALLNELLLLEWNVKARKIFVISQYVEAGPLAHDIVEVPNSGGLAFLFRAGDVLLM
DLRDHRNPSCVCKTNLNFLPHAMEEQTYVEDSCKLHDVDDERFSVAACALLELSDYDPMC
IDSDNGGANSGYKYICSWSWEPENNRDPKMIFCVDTGEFFMIEVLFNSEGPKVNLSECLY
KGLPCKALLWVEGGYLAALVEMGDGMVLKLEDGRLCYTNPIQNIAPILDMEVVDYHDEKH
DQMFACCGVAPEGSLRIIRNGINVENLHRTASIYQGVSGTWTVRMKVTDSHHSFLVLSFL
DETRILSVGLSFTDVTDSVGFQPNVCTLACGLVTDGLLVQIHRSTVKLCLPTKASHSEGI
PLSSPICTSWSPDNVGISLGAVGHNFIVVSTTNPCFLFILGVRLLSVYQYEIYEMQHLVL
QNELSCISIPGQEIEQKQSNSSISANNSSISSFQSGVDINKTFVIGTHKPSVEIWFFAPG
GGITVVACGTISLTNTIGSVKSDSIPQDVRLVSADKYYVLAGLRNGMLLRFEWPAEPCPS
SPINMVDTALSSTNLVNSVTNAFDKRNDLPSMLQLIAIRRIGITPIFLVPLGDTLDADII
VLADRPWLLHSARQGLSYTSISFQPATHVTPVSCVEFPKGILFVAENSLHLVEMGHGKRL
NVQKFHLEGTPRKVLYHDESKMLLVMRTELNCGPCLSDICCVDSLSGSVLSSFRLELGET
GKSMELVRVGSEQVLVVGTSLSSGPHTMPTGEAESCKGRLLVLCLDHVQNSDSGSMTFCS
KAGSSSQKTSPFHEIVTYAPELLSSSSLGSSPDDNSSDGIKLHENEVWQFRLAYATKWPG
VVLKICPYLDHYFLATAGNAFYVCGFPNDNPQRVRRYAMGRTRYMITSLTAHLTRIAVGD
CRDGILLYSYHEEAKKLELLYNDPSQRIVADCILMDADTAVVSDRKGSIAVLCSDHLEAS
DNAGAQCNMTLSCAYFMAEIAMSIKKGSYSYRLPADDVLEGGNGPKTNVDSLQNTIIAST
LLGSIMIFIPLSREEYELLEVVQARLVVHHLTAPVLGNDHHEFRSRENRVGVPKILDGDI
LTQFLELTSMQQKMILSLEQPDMVKPSLKPLLPSHVSVNQVVQLLERVHDALN
NT seq
4122 nt
NT seq
+upstream
nt +downstream
nt
atggcggtttccgaagaagaatgctcttctgcgaagtcaggttcatcaggtccctcttct
tcgtcttcctccgcctcgcgttactacctctccaagtgcgttttcagaggcagcgtcgtt
cttcatgtcctccacgctcacatccgttctccctcctcaaacgacgtcgttttcggcaag
gagacatctatagaattggtggttattgatgaggatgggaatgtgcaatctgtgtttgat
cagcctgtctttggcaccctcaaagatcttgccatattgccctggaatgagaaatttcgt
gccgcgcgtgatccgcagctgtggggtaaagaccttttggttgctacatctgattctggg
aagttgtcgttgcttacattttgcaatgaaatgcataggtttgtacctgtaacacatatt
cagctatctaatcctggaaaccaaatggattttcctggaagaaagctagcagttgattcc
agtggttgttttattgctgccagtgcatatgaagatcggttggctttgttttctttgtca
atgtccagtggtgatatcattgatgagagaattgtatatccttctgaaagtgaagggact
gcaagtacttccagaagcatccaaagaaccagtataagtgttactatttggagcatctgt
ttcatttcacaagattccagacaaccaagcaaggagcataatcctgtactagctcttatt
ataaataggagggaagcgcttctaaatgaactgctattattggaatggaatgttaaagca
cgtaaaatatttgttatttctcagtatgttgaagctgggcctctagcacatgacattgtt
gaagttcccaactctgggggacttgcatttctattcagggctggtgatgttctcttaatg
gatcttagagatcatcgcaacccatcctgtgtctgtaagactaacttgaacttcttaccc
catgccatggaagagcagacttatgtggaagactcttgtaaattacacgatgttgatgat
gaacgctttagtgttgctgcctgtgctttgttggagctgagtgattatgatcctatgtgc
atagacagtgacaatggtggtgctaattcaggttacaaatacatatgctcgtggagttgg
gaacctgaaaataatagagatcctaagatgattttctgtgtagatactggggaatttttt
atgattgaagtcctttttaattctgaaggccctaaagttaatctgtctgagtgtctctat
aaaggtctaccctgtaaagcacttttgtgggttgaaggtggatatcttgctgcccttgtg
gaaatgggggatggtatggtcctgaaattggaagatggaaggctgtgttatacaaaccct
attcaaaacattgcaccaatcttggatatggaagttgtagattatcatgatgagaagcat
gatcaaatgtttgcttgctgtggtgtggcaccagagggctcattaaggattattcgaaat
ggtattaatgtggaaaatctacataggactgcttctatatatcaaggggtaagtggtact
tggactgtccgaatgaaagttacggattcacaccattcttttctagttctatcatttctt
gacgaaaccagaatattgtcagttggcttaagttttactgatgtgactgattcagtcggt
ttccaacctaatgtctgtactttggcatgcggccttgtgactgatggtttgcttgttcag
atccaccgatctactgttaagctttgtttgcccactaaggcttctcattctgaaggtatc
cctttgtcctctcctatttgcacatcttggtctccagacaatgtgggtattagtttgggg
gcagttgggcataatttcatagttgtgtcaaccactaacccatgctttctgtttatcctt
ggggttagattgctatcagtttatcaatatgaaatttatgaaatgcaacatttggtactg
cagaatgaattatcgtgcatttccatccccggacaagaaattgagcaaaaacaatcaaat
tcgtccatttctgctaataatagtagcatctcttctttccaaagtggggtggacatcaat
aaaacctttgttattggcacacataagccttccgtggaaatttggttttttgcaccaggt
ggaggaattacagtagttgcttgtgggacaatttcattaacaaatacaatagggtctgtc
aaaagtgattctataccccaagatgtacggcttgtatctgctgataagtattatgttctt
gctggattgaggaatggaatgctccttcgcttcgagtggccggcagaaccatgtccttca
tcaccaataaatatggtggatactgctttatcttctacaaatttggtaaattctgtgact
aatgcttttgacaagagaaatgaccttccttccatgcttcaattgatcgccattcgacga
attggcattactccaatttttttggtgcccctgggtgatacactggatgccgatataatt
gttcttgctgataggccttggctgttgcatagtgcaagacaaggcctttcctatacttct
atctcatttcaaccagccacacatgtaactcctgtttcctgtgttgagtttccaaaagga
atattatttgttgcagaaaacagtttacatctggtggagatgggccacggcaagagactt
aatgtgcagaagtttcatttagagggcactccacggaaggtcttgtatcatgatgaaagc
aagatgttgcttgtgatgaggactgaactgaattgtggtccatgtttgtctgacatatgt
tgtgtggattccctaagtgggtcagtactgtcatcttttagacttgaacttggagaaaca
ggaaaatctatggaattagtaagagttggaagtgagcaggtgcttgttgttggaactagt
ctgtcttctggtccgcacacaatgcccactggtgaagctgaaagttgcaagggtcgtctt
cttgttctctgtcttgatcatgtgcaaaattcagatagtggttcaatgacattctgttca
aaggcagggtcatcatctcaaaaaacttcaccattccatgaaattgttacatatgctcct
gaactgttatcgagcagtagccttggcagcagtccggatgataatagttctgatggcatc
aaacttcatgaaaatgaagtatggcagttccgattggcttatgcaactaaatggccagga
gttgtacttaaaatctgtccttatcttgatcattacttcttggcaacagctggcaatgct
ttctatgtttgtggtttccctaatgacaatcctcaaagagtgagaaggtatgctatggga
aggacgcgctacatgataacatctttgactgcacatttgactagaattgcagttggtgat
tgtcgtgatggtatccttttatattcttatcatgaggaagcaaaaaaattggagctactt
tacaatgacccatcacaaaggatagttgctgattgcattctcatggatgctgatactgct
gttgtttcggatcgtaaaggaagcattgctgttttatgttcagatcacttggaagcatca
gacaatgcaggtgcacaatgcaacatgacactaagctgcgcttatttcatggctgagata
gctatgagcatcaagaagggctcatattcatacagacttccagctgatgatgttttggaa
ggtggaaatggccccaagacaaatgttgattcattacaaaatactattattgccagtacc
ctgttaggaagcataatgatcttcattcctttatcaagggaagaatatgagctcttagaa
gtagtgcaagcaagacttgttgtccatcatttgacagcgcctgttctaggaaatgatcat
catgagtttcgcagtcgcgaaaatcgggttggagtacccaagatacttgatggtgacatc
ttgacccagtttctggagctgacaagtatgcagcaaaagatgattttgtcactggagcaa
ccggatatggtaaaaccaagtttgaagccactcctaccctctcatgtttctgtaaatcag
gtggttcaacttcttgaacgagtccatgatgctctgaactaa
DBGET
integrated database retrieval system
