Glycine soja (wild soybean): 114399921
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Entry
114399921 CDS
T06057
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114399921
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114399921
Enzymes [BR:
gsj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
114399921
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114399921
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
114399921
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
IG_AIR9
PDE12-like_N
Motif
Other DBs
NCBI-GeneID:
114399921
NCBI-ProteinID:
XP_028217944
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Position
19:complement(46078511..46084712)
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AA seq
600 aa
AA seq
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MLSVLRVHLPSDIPIVGCELTPYVLLRRPDKIVTTDDVPETAPLDGHFLRYKWYRVQSDK
KVAVCSVHPSEPATLQCLGCVKSKIPVAKSYHCTPKCFSDAWQHHRVLHDRAASAANENG
NEEEELYGRFNNSGSGSINTSLSASASSASLTNGSAPVYPAAVTQRSGGETWFEVGQFKT
YTPTADDIGHVLKFECTVVDAETKLTVGHVNTLLTSRVIPAPSPSPRRLIPVDGMGHLDA
DGRITSSGTFTVLSYNILSDAYASNDLYNYCPTWALSWPYRRQNLLREIVGYRADIICLQ
EVQSDHYEDFFSPELDKHGYYGFYKRKTNEVYNGNINTIDGCATFFRRDRFSHVKKYEVE
FNKAAQSLTDAVIPTTQKKTALNRLVKDNIALIVVLEAKVINQPVDNPGKRQLLCVANTH
VNVHHDLMDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSIPGSAPHALLAMGKVDPSH
PDLAVDPLNILRPHSKLVHQLPLVSAYSSFARTVGLGFEQHKRRLDDTTNEPLFTNVTRD
FIGSLDYIFYTADSLVVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCCKNRSRR
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgctgagcgtgctgcgcgtgcaccttccttctgatattcccattgtaggctgtgagctc
acgccttacgtgctcctacgccgacctgataagatcgttaccaccgacgatgtccccgaa
accgccccgttagacggccatttcttgcgctacaagtggtatcgtgtacagagtgataaa
aaggttgctgtttgtagtgtacatccttctgagccggccacactgcagtgcctaggttgt
gtaaagtctaaaatacctgttgccaaaagttaccactgcactccaaagtgtttttcagat
gcatggcagcatcatcgtgtcttacatgaccgtgctgcaagtgcagccaatgaaaatgga
aatgaggaagaagagttatatgggcgatttaataattctggatctggatcaatcaatacc
agcttatctgcctctgcatcaagtgctagcttgacaaatgggtctgcacctgtgtatccg
gcagccgttacgcaacgaagtggtggtgaaacttggtttgaagtagggcaatttaagacg
tataccccaacagctgatgacattggacatgtccttaaattcgagtgtactgtagttgat
gcagagaccaaacttactgtagggcatgtaaacactctactaacttcccgtgtcattcct
gctccctcgcctagcccgcgccgactgatacctgttgatgggatgggacatttggatgct
gatgggcgtataacatcttcaggaacttttactgttctatcatacaacatattatctgat
gcatatgcctcaaatgatctatacaattactgccctacgtgggctctttcctggccatat
cgtaggcaaaatttgttacgagaaatagttggttaccgtgctgatattatttgtcttcag
gaggttcaaagtgatcattatgaagattttttttctcctgaactggacaaacatggctat
tatggtttttacaaaaggaaaacaaatgaggtttacaatggaaacattaatacaattgat
gggtgtgcaacatttttccgtagagacagattttctcatgtgaaaaaatatgaggttgaa
tttaataaggctgcacagtctttaacagatgctgtgattccgaccactcagaagaaaact
gccttgaatagactggttaaggataatattgcactaatagtcgttttagaagcaaaagtt
atcaatcagcctgttgataatccagggaaaagacagcttctttgtgtagcaaatacacat
gtaaatgttcaccatgatttaatggatgtcaaactctggcaggtgcacactctcttgaaa
ggattggagaaaattgctgccagtgcagacattccaatgttggtttgtggggactttaat
tcaattccaggaagtgctcctcatgcacttcttgcaatggggaaggtagatccatcgcat
cctgatttagcagttgacccacttaatatattgcgacctcacagcaagttggttcaccag
ttgccactggtcagtgcttattcgtcttttgcaagaacagttggtcttggatttgagcag
cataaacggagactagatgacacaacaaatgaacctttattcacaaatgtaactagagat
tttattggctctcttgattacatattttacacagcggattcattggttgtggagtcattg
ctggagttattggatgaggaaagtttgaggaaagacacagcacttccttctcctgaatgg
tcctctgatcatatagctctgttagctgagttccgctgctgcaagaatagatctaggcgc
tga
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