Glycine soja (wild soybean): 114399956
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Entry
114399956 CDS
T06057
Name
(RefSeq) cleavage stimulation factor subunit 77
KO
K14408
cleavage stimulation factor subunit 3
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114399956
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114399956
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
114399956
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
HAT_Syf1_CNRKL1_C
TPR_19
TPR_15
TPR_16
TPR_Edg1
TPR_2
ANAPC16
Motif
Other DBs
NCBI-GeneID:
114399956
NCBI-ProteinID:
XP_028217987
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Position
19:18667657..18698135
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AA seq
739 aa
AA seq
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MDKPSGGDKYNVETAEILANEAQHLPVAEATPIYEQLLLLFPTAAKFWRQYVEAHMAANN
DDATKQIFSRCLLNCLQIPLWRCYIRFIRKVNDKKGMEGQEETRKAFDFMLNYVGADIAS
GPVWMEYIAFLKSLPAINAQEESHRMTTMRKVYQKAIVTPTHHIEQLWKDYENFENSVSR
QLAKGLISEYQPKYNSARAVYRERKKYVDEIDWNMLAVPPTGSYKEEMQWMAWKRLLSFE
KGNPQRIDTASSNKRIIFTYEQCLMHMYHYPDIWYDYATWHAKGGLIDSAIKVFQRALKA
LPDSEMLRYAYAELEESRGAIQAAKKIYESVMGDGDSATTLSHIQFIRFLRRTEGVEAAR
KYFLDARKSPSCTYHVYVAYATMAFCLDKDPKMAHNVFEAGLKRFMHEPVYILEYADFLI
RLNDDQNIRALFERALSSLPPEESVEVWKKFTKFEQTYGDLASMLKVEQRRKEALSGAED
GTALESSLQDIVSRYSFMDLWPCSSNDLDHLARQQWLAKNINKKVEKSILPNGTTLLDKT
SMASISTMPSKIVYPDTSKMVIYDPKHTPGAGTNAFDEILKATPPALVSFLANLPAVEGP
MPNVDIVLSICLQSDLPTGQSVKTGIPTQVQSGKAGIPALLPAGSAPAAAASELSGSSKS
HPAPSGGVSLKPGSNRQYGKRKEPDRQDEDDTTTVQSQPLPRDAFRIRQYQKARASSASQ
TGSVSYGSAFSGDLSGSTG
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atggacaaacccagtggaggtgacaagtataatgttgaaaccgcggaaatcttggcaaac
gaggctcagcatttgcccgtcgcggaggccacacccatatacgagcagcttctgctattg
tttccaactgcagccaagttttggaggcaatatgtggaggcacatatggctgcaaataat
gatgatgctacaaaacagatttttagtcggtgcttgttgaattgtcttcagattcctcta
tggcggtgttacattcgttttattagaaaggtaaatgacaagaagggcatggagggtcaa
gaagagacaagaaaagcttttgattttatgcttaactatgttggagcagacattgcatct
ggccctgtgtggatggagtacatagcctttctaaagtcattgccggctataaatgctcaa
gaagaatcacaccggatgactacaatgaggaaagtctatcagaaggctattgttactccc
actcatcacattgaacaactttggaaggactatgaaaattttgaaaattctgttagccgt
cagttggctaaaggactaatatctgaatatcaacccaaatataatagcgctagggcagtt
taccgggagaggaagaagtatgttgatgaaattgattggaatatgcttgctgtaccacca
actggatcctacaaggaagaaatgcagtggatggcatggaagagacttttatcttttgaa
aaaggaaatccacagagaatagatactgcatcctccaacaaacgaattatatttacttat
gagcagtgtctgatgcatatgtaccattatcctgatatatggtatgactatgctacatgg
catgccaaaggtggtttgatagattctgcaatcaaagtatttcaaagggctctgaaggct
ctccctgattcagaaatgctacgatatgcttatgcagagctagaggaatctcgtggagca
attcaggctgcaaagaaaatatacgaaagtgttatgggagatggtgacagtgctaccaca
ctttctcatattcaattcattcgttttctaagaagaactgaaggtgttgaagctgctagg
aagtactttctggatgctcgcaagtccccaagctgtacatatcatgtttatgttgcttat
gctacaatggcattttgtcttgacaaggatccaaagatggctcataatgtttttgaagca
ggactaaaacgctttatgcacgagcctgtttatattctcgaatatgctgatttcttgata
cgtctgaatgatgaccaaaatatacgtgctttatttgagagggcattaagttcacttcca
ccagaggaatcagttgaggtctggaaaaagttcaccaagtttgagcaaacttatggggat
cttgctagcatgctgaaggttgagcaaagaaggaaagaagcactttctggagctgaagat
ggaacagcattagagagttctctgcaagacattgtatcacggtacagtttcatggatctg
tggccgtgctcctctaatgatcttgatcatttagctcggcaacagtggcttgccaaaaat
atcaataagaaagtggagaagtctattttgcctaatggaacgactcttttagataagaca
tctatggcaagcatttcaactatgccatcaaaaattgtttatcctgatacttcaaagatg
gtgatatatgatccaaagcatactcctggtgctggaacaaatgcatttgatgaaattctg
aaagctacaccacctgctttggtatcatttttggcaaatctacctgcagttgaaggccca
atgccaaatgtggatatcgtgctatcaatttgtttgcaaagtgatctaccaacaggacaa
agtgtgaaaacagggattccaacacaagtacaaagtggtaaagcaggaattccagcacta
ttaccagctggttctgctcctgctgctgctgcaagtgaactttctggttcaagcaaatct
caccctgctccaagtggtggtgtatctttgaaaccaggaagtaatagacaatatgggaaa
aggaaggaaccagacaggcaagatgaggatgatactacaactgtccaaagtcaaccactt
ccacgagatgctttccggatacgacagtatcagaaagctcgagccagcagtgcttcacaa
acaggatcagtttcatatggaagtgcattttctggcgatttgtctggcagcactggctga
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