Glycine soja (wild soybean): 114400115
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Entry
114400115 CDS
T06057
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj04120
Ubiquitin mediated proteolysis
gsj04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
114400115
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
114400115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gsj04121
]
114400115
Enzymes [BR:
gsj01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
114400115
Ubiquitin system [BR:
gsj04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
114400115
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
114400115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
WDR55
Beta-prop_WDR19_1st
Beta-prop_EIPR1
EIF3I
Beta-prop_DCAF4
zf-C3HC4_2
WD40_MABP1-WDR62_2nd
Beta-prop_HPS5
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
zf-C3HC4
WD40_like
WD40_RFWD3
WD40_MABP1-WDR62_1st
Beta-prop_CAF1B_HIR1
zf-RING_UBOX
zf-C3HC4_4
zf-C3HC4_3
zf-RING_2
Beta-prop_WDR75_1st
U-box
Beta-prop_WDR35_TULP_N
zf-RING_10
Beta-prop_IFT122_1st
zf-RING_5
Beta-prop_DCAF12
zf-Nse
YbfN
Beta-prop_IFT122_2nd
Baculo_p24
Beta-prop_SPT8
DUF1664
Motif
Other DBs
NCBI-GeneID:
114400115
NCBI-ProteinID:
XP_028218201
LinkDB
All DBs
Position
2:47365643..47376032
Genome browser
AA seq
669 aa
AA seq
DB search
MEELSAGPLVPAVVKPEPSKGASAAASGGTFPASTSEPDKDFLCPICMQIIKDPFLTACG
HSFCYMCIITHLRNKSDCPCCGDYLTNTNLFPNLLLDKLLKKTSARQISKTASPVEHFRQ
VLQKGSDVSIKELDTLLSLLAEKKRKMEQEEAERNMQILLDFLHCLRKQKVDELKEVQTD
LHFIKEDINAVEKHRMELYRARDRYSVKLQMLDGSGGRKSWHSSMDKNSSGLLSSPLNLR
GGLSSGSHTKKNDGKSHISSHGHGIQRRNVITGSDSQYINQSGLALVRKKRVHTQFNDLQ
ECYLQKRRHAADRSHSQQERDISLINREGYTAGLEDFQSVLTTFTRYSRLRVIAELRHGD
IFHSANIVSSIEFDRDDDLFATAGVSRRIKVFDFSAVVNEPTDAHCPVVEMSTRSKLSCL
SWNKFAKNQIASSDYEGIVTVWDVTTRKSLMEYEEHEKRAWSVDFSRTDPSMLVSGSDDC
KVKIWCTNQEASVLNIDMKANICCVKYNPGSGNYIAVGSADHHIHYYDLRNISRPVHVFS
GHRKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFKGHANEKNFVGLTVSSEYIA
CGSETNEVFVYHKEISRPLTSHRFGSPDMDDAEDEAGSYFISAVCWKSDRPTILTANSQG
TIKVLVLAA
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggaagagctctcagcggggcctctcgtccccgccgtcgtcaaacctgaaccgtccaaa
ggcgcctccgccgctgcctccggcggcacgttcccggcctccacgtcggagccggacaag
gacttcctctgtccgatttgcatgcagatcatcaaggacccgttcctcaccgcgtgcggc
cacagcttctgctacatgtgcatcatcacgcacctccgcaacaagagcgattgcccttgc
tgcggcgactacctcaccaacaccaacctcttccctaacttgttgctcgacaagctactg
aagaagacttctgcacgtcaaatatcaaaaaccgcttcacctgtcgaacattttcggcag
gtattgcaaaagggttctgatgtgtcaattaaggagctagacacccttttgtcacttctt
gccgagaagaaaagaaaaatggaacaagaagaagctgagagaaatatgcaaatattgtta
gacttcttgcattgcttacgcaagcaaaaagttgatgagttgaaggaggtacaaactgat
ctccactttataaaagaggacataaatgctgtggagaaacatagaatggaattgtatcgt
gcacgggacaggtactctgtaaaattgcagatgcttgacggttctgggggaagaaaatca
tggcattcatcaatggacaagaacagcagtggccttttatctagtcctctaaatcttcga
ggagggttgtcatcagggagccatactaagaaaaatgatggaaagtctcatattagctct
catgggcatggaattcagagaaggaatgtcatcactggatccgattcacaatatataaat
caatcgggtcttgctctagttagaaagaagagggtgcatacacagttcaatgatctacaa
gaatgttacctacaaaagcgacggcatgcagctgataggtcccatagccaacaagaaaga
gatataagtctcataaatcgagaaggttatactgctggtcttgaagattttcagtcagtc
ttgacaactttcacacgctacagccgattgagagtcattgcggaactaagacatggggat
atatttcattcagcaaatatagtgtcaagcatagagtttgaccgcgatgatgatttgttt
gctactgctggagtttcgcggcgcatcaaagtttttgacttttctgctgttgtgaatgaa
cctacagatgctcattgtcctgttgtggagatgtctacacgttcaaaacttagttgcttg
agttggaataaatttgctaagaatcaaatagctagtagtgattatgaaggaattgtgact
gtttgggatgtaaccactcggaagagtttaatggaatatgaagagcatgaaaagcgtgca
tggagtgttgatttttcaagaacagatccctctatgcttgtatctggtagcgatgactgt
aaggtcaaaatttggtgcactaatcaggaagctagtgttctaaatatagacatgaaagca
aacatatgttgtgtcaaatataatcctggatctggcaattatattgcagttgggtcagca
gaccatcacatccattattatgatttgagaaatattagccgtccagtccatgttttcagt
gggcacaggaaggctgtttcatacgtgaaatttctgtctaatgatgaacttgcttctgca
tcaacagatagtacactgcgattatgggatgtgaaggaaaacttaccagttcgtactttc
aaaggccatgcaaatgagaaaaactttgttggtcttacagtaagcagtgaatatattgcg
tgtggcagtgaaacaaatgaagtctttgtttaccacaaggaaatctcgagacctttgact
tcgcacagatttgggtcccctgatatggatgacgctgaagatgaggctggatcatatttc
atcagcgctgtttgctggaagagtgatcgccccactattctaacagcaaatagtcaaggc
accatcaaagtgctggtgcttgcagcttga
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