Glycine soja (wild soybean): 114400766
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Entry
114400766 CDS
T06057
Name
(RefSeq) general transcription factor IIH subunit 2-like
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03022
Basal transcription factors
gsj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
114400766
09124 Replication and repair
03420 Nucleotide excision repair
114400766
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gsj03021
]
114400766
03400 DNA repair and recombination proteins [BR:
gsj03400
]
114400766
Transcription machinery [BR:
gsj03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
114400766
DNA repair and recombination proteins [BR:
gsj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
114400766
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
VWA
IBR
VWA_3
Motif
Other DBs
NCBI-GeneID:
114400766
NCBI-ProteinID:
XP_028219196
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Position
19:complement(38751118..38755099)
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AA seq
420 aa
AA seq
DB search
MNNVAERPLNGDVEDDDEDDGGGLEAWERTYAEDRSWEALQEDESGLLRPIDTTAIYHAQ
YRRRLRTLAATAATARIQKGLIRYLYIVVDLSKASSERDFRPSRMAVMGKQVEAFIREFF
DQNPLSHVGLVTIKDGIAHCITELGGSPESHIKALMGKLECSGDASLQNALELVLGYLNQ
IPSYGHREVLILYSALSTCDPGDLMETIQKCKKSKIRCSVIGLAAEMFVCKHLCQETGGT
YSVALDESHFKELILEHAPPPPAIAEYATANLIKMGFPQRSAEGSVAICTCHEEAKTGGG
YTCPRCKVRVCELPTECRVCGLTLISSPHLARSYHHLFPIVMFDEVTPSSQNDSNRSFPN
TCFGCQQSLLSQGNKPGLSVICPKCKQQFCLDCDIYVHESLHNCPGCESSRHSKSVTASQ
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgaacaatgttgctgaaagaccgcttaacggagacgtagaggatgatgatgaggatgat
ggtggaggccttgaagcctgggagagaacttatgctgaggatagatcatgggaggctttg
caagaggatgaatctggacttcttcgccccatagatactactgccatttaccatgcccaa
tatcgcaggcgccttcgtacccttgctgccacagcagctactgcacggattcagaagggg
cttatacgatacctgtacattgttgttgacctgtccaaggcatcttcagagagagacttt
cgacctagtaggatggctgtgatggggaaacaggttgaggcatttatcagggaattcttt
gatcagaatccacttagtcatgttggtctggtgactataaaagatgggattgctcattgc
ataacagaacttggtggcagtcctgagtctcacattaaagctttgatgggtaaactggaa
tgctcaggtgatgcctccttacaaaacgcactggagcttgttcttggatatctaaatcaa
atcccatcatatggtcatcgagaagttctgatcttatattcagctctcagtacatgtgat
cctggtgatctcatggaaaccatccagaaatgcaaaaagagtaaaataaggtgctcagtc
attggtcttgcagctgaaatgtttgtttgcaaacatctctgccaggaaactggagggact
tattctgttgcactagatgagtcccactttaaagagttgatcctagagcatgcacctcca
cctccagcaatagcagagtatgctactgctaatttaattaagatgggtttcccacaacga
tcagctgagggttctgtcgcaatatgcacatgtcatgaagaggccaagaccggaggggga
tacacttgtccaagatgcaaagttcgtgtctgtgagcttcccactgaatgtcgtgtgtgt
ggattgacccttatttcttcaccccatttggcaaggtcatatcatcatctatttcctata
gtgatgtttgatgaggtcactccatcatctcaaaatgattcaaaccgcagttttcccaat
acttgttttggttgtcaacaaagtcttcttagtcagggaaacaagcctggactttctgtt
atttgcccaaaatgcaagcaacaattctgcctcgattgtgacatctacgttcatgagagc
ttacataactgcccaggctgtgagagttccaggcactctaagtctgtaactgcttcccaa
tga
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