Glycine soja (wild soybean): 114402587
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Entry
114402587 CDS
T06057
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114402587
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114402587
03012 Translation factors [BR:
gsj03012
]
114402587
Enzymes [BR:
gsj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114402587
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
114402587
Translation factors [BR:
gsj03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
114402587
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
AAA_19
nSTAND3
ATPase
AAA_11
Dicer_dimer
T2SSE
PhoH
Motif
Other DBs
NCBI-GeneID:
114402587
NCBI-ProteinID:
XP_028221018
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All DBs
Position
20:complement(39526525..39544895)
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AA seq
1179 aa
AA seq
DB search
MVSVSCIPKTLKPSIPLPMKDGRTLSSYGSVYIPPHQRLRSLANFNNSLSPVRAKLHENP
TPAVVTTLQPSFTEHLPDKQRSRFVSSYDDTVSEEGSDREFQPPSLPNASPIDNTDEWKR
KFTMLLRDKSKQELVSREKKDRRDFDRIAVLASRMGLYSHMYAKVVVFSKVPLPNYRYDL
DDRRPQREVSLSITMYTQVNVYFEEYLGQKSRMNKSFSDLSSARSSSNGSIGTDEGLFEL
PEPLASSNAYMEKILRQRSLQMRDQQQAWQESPEGRRMLEFRRSLPAYKKKEAILSVISR
NQVVIISGETGCGKTTQIPQFILESEVESVCGAACNIICTQPRRISAMSVSERVASERGE
KLGESVGYKVRLEGMKGRDTHLLFCTTGILLRRLLADRKLKGVTHVIVDEIHERGMNEDF
LLIILKELLPHRPELKLILMSATLDAELFSSYFNGAPIMFIPGFTYPVRTHFLENILEMT
GYRLTPYNQIDDYGQERMWKMNKHAPRKRKSQIASAVEDAIMAADFKDYSLQTQESLSCW
NPDCIGFSLIEYILCNICENERPGAVLVFMTGWDDISSLKEKLLTHTVLGDANRVLLLTC
HGSMASSEQRLIFEEPEDGVRKIVLTTNIAETSITINDVVFVLDCGKAKETSYDALNNTP
CLLPTWISKVSAKQRRGRAGRVQPGECYHLYPRCVYDAFAEYQLPEILRTPLQSLCLQIK
SLRLGSISEFLSRALQSPETLVVQNAIEYLKIIGALDEDENLTILGRCLTMLPMEPKLGK
MLILGAIFNCLDPILTVVAGLSVRDPFLTPLDKRDLAEEAKSQFCGAYSDHLALVRAYEG
WRDAEMDLGGYEYCWKNFLSSQSMKAIDALRREFICLVKDIGLVDSNTASCNEWSSDVNL
IRAIICYGLYPGICSVVHNEKSFSLKTMEDGQVLLYSNSVNAQETKIPYPWLVFNEKIKV
NSVFLRDSTAVSDSVVLLFGGSLLKGDTDNHLKMLGGYLEFFMEPSVAEMYQSIRRELDD
FIQSKLLFPRMATQWCHDLISAVRLLISNDKCEGRFVFGRQVLKPSKKSIVMASHPTLVS
RTESGPGGDNSKSQLQTLLTRAGYAAPIYMTKQLKNNQFQATVEFNGMQIMGQPCNNKKS
AEKDAAAEALQWLMGGKQTGKEYINHVSMLLKKSKKDHN
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atggtctccgtttcgtgcatccccaaaaccctaaaaccctccattccccttcccatgaag
gacggccgaacgctgtcctcctatggctccgtttacattccgccgcaccagcgtctgcgc
tccctcgccaatttcaacaactctctctctcctgttcgcgccaaactccacgaaaaccct
acacccgccgttgttactactctgcaaccatcgtttacggaacatcttcctgataaacag
cgttcgcgcttcgtttcttcttatgacgacaccgtttccgaagaaggctccgatcgtgaa
tttcaacctccctcactaccgaatgcttcccctattgataacaccgatgagtggaagcgg
aaatttactatgctcttgagggacaagagtaagcaagagttggtctcgagggagaaaaag
gataggcgtgattttgaccgaatagcagttctagcaagcagaatggggttgtatagccat
atgtatgctaaggttgttgtcttcagcaaggtcccacttccaaattacagatatgatttg
gatgatcggcggcctcagagggaggtgagcttgtctatcaccatgtatacccaagttaat
gtttattttgaggaatatcttggccaaaaatccaggatgaacaaaagcttttcagatttg
tcatctgcaagatcaagcagtaatggcagtattggtactgatgaagggctttttgagcta
cctgagccattagcatccagtaatgcttatatggagaaaattctacggcagaggagctta
caaatgcgcgatcagcagcaagcttggcaggaatctcctgaaggaagaagaatgctagaa
tttcgcagaagtctccctgcttataaaaagaaagaagcaatattatcagtcatatcaagg
aatcaggtagttatcatttcaggcgaaacaggttgtggcaagacaacacaaattccacaa
tttattttagaatctgaggtagaatcagtttgtggagctgcttgtaatattatatgcaca
cagccaagacgcatttcagccatgtctgtttctgaaagggtggcctctgagagaggggag
aaattgggcgaatctgttggatataaagttcgacttgagggtatgaaagggagagatacc
catcttctcttttgcaccacaggcattttattaagaagattactagctgatagaaagtta
aaaggtgtaactcatgttattgtggatgaaattcatgagcgtgggatgaatgaagatttt
ctgcttattatccttaaagaacttcttccacatcgaccagaactgaaactgattttgatg
agtgctaccctagatgctgagctcttctcttcatactttaatggggccccaattatgttt
attccgggcttcacataccccgttagaactcactttttggagaacattcttgaaatgacg
ggctacagattaactccttataatcaaatcgatgattatggtcaagaaaggatgtggaaa
atgaacaaacatgccccaagaaagagaaaaagccaaattgcttctgctgtagaggatgca
attatggcagctgatttcaaagattacagcctacagacacaggagtctttgtcgtgttgg
aatcctgactgtattggttttagtctcatagaatatattttatgcaatatatgtgagaat
gaacggcctggtgctgttttggttttcatgactggatgggatgatataagctctctgaaa
gagaagctcctgacacatactgtcttgggagatgcaaaccgtgttttgttgcttacatgt
catggctcaatggctagttcagagcagagattaatatttgaagagcctgaagatggagtt
agaaaaatagtgctaacaacaaatattgctgaaacgagtatcacgataaatgatgttgtt
tttgttcttgactgcggaaaagcaaaagaaacatcatatgatgcactgaataacacgcct
tgtttgcttcctacatggatctctaaggtttctgctaaacaaagaagaggaagagctggt
cgggttcaaccaggagagtgttaccatctctatcctagatgtgtgtatgatgcttttgca
gagtatcagttgccagaaattttgagaacacctttgcaatctctctgtttacaaatcaaa
agtctaagacttggaagtatatcggagttcttgtctagggctttgcagtctcctgagaca
ctcgtggtacaaaatgctattgaatatttaaaaataattggggctttggatgaggatgaa
aatctcactattctagggcgctgcctgacaatgcttcctatggaacccaaacttggcaag
atgctaatattaggtgctattttcaattgcctggatcccatattaactgtggttgctggg
cttagcgtgagagatccttttctaacaccattggataaaagagatcttgcagaggaagca
aagtctcaattctgtggtgcatacagtgatcaccttgcacttgtaagggcatacgaaggt
tggagagatgctgaaatggaccttggaggatatgaatactgctggaaaaattttctttcc
tcacaatccatgaaagctattgacgctcttcggagagagttcatatgcctggtcaaggat
atcggattagttgatagcaacacggccagctgcaatgaatggagctctgatgtaaatctt
atccgagcaattatttgctatggtctatatcctggaatttgctctgttgtgcataatgag
aaatcattctctttgaaaacaatggaggatggtcaagtgctcctatattcgaactcagtg
aatgctcaggaaactaaaattccgtatccatggctagtttttaatgagaagataaaagtg
aactcagtttttcttcgtgactcaacagctgtgtctgattcagtggtgcttctgtttggt
ggaagcttattgaaaggagatactgataatcacttaaaaatgttgggaggatatctagag
tttttcatggagcccagtgttgctgaaatgtaccagagtataagaagagaacttgatgac
ttcattcagagcaaactactttttccaagaatggccacacagtggtgtcatgatctcata
tctgcagtaaggcttctgatttcaaatgacaagtgcgaaggtagatttgtatttggtcgc
caggttcttaaaccatcaaagaaatctattgtgatggcctcacacccaaccttggtttca
aggactgagagtggacctgggggtgataattctaaaagtcagctccaaaccttgcttacg
agagcaggatatgcagcacccatctacatgactaaacaattgaagaacaatcagtttcag
gctaccgttgaattcaatggaatgcagataatgggtcaaccttgtaacaataagaagagt
gcagaaaaagatgctgcagctgaggcactgcaatggctgatgggtggaaagcaaacaggc
aaggagtacatcaatcacgtgtcgatgttacttaagaaaagtaagaaggatcacaattaa
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