Glycine soja (wild soybean): 114403230
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Entry
114403230 CDS
T06057
Name
(RefSeq) pre-mRNA-processing factor 17-like isoform X1
KO
K12816
pre-mRNA-processing factor 17
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114403230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gsj03041
]
114403230
Spliceosome [BR:
gsj03041
]
Complex C
Other components
Step II factors
114403230
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WDR55
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
Beta-prop_EIPR1
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_DCAF4
WD_LRWD1
WD40_MABP1-WDR62_1st
Beta-prop_NWD2_C
Beta-prop_IFT140_1st
eIF2A
Beta-prop_Vps41
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
114403230
NCBI-ProteinID:
XP_028221857
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Position
20:46616919..46621031
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AA seq
575 aa
AA seq
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MDLLHQYSDGDDPDSPSENPSSPPRLLPGRSAAPNVDDTMLALTVASSSSALSRPIDPTQ
HLVGFNPSYDQLWAPIQGPAHPFAKDGIAQGMRNHKLGFVEDASIEPFLFDEQYNTFHKF
GYAADPAANNFVGDLDALRDNNAVSVYNIPRHEHKKRRIEAKQKKKSEEDDDGDVNEEIE
NPASEAWIMKNKKSPWAGKKEGLQGELTEEQQKYAEEYAKKKGEEKSGLGGEKVEVVKDK
STFHGKEERDYQGRSWIAPPKDAKANSDRCYIPKRLIHTWSGHTKGVSAIRFFPKYGHLI
LSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDICFSNDGTKFLSAGYDKNIKYWDTETG
QVISTFATGKIPYVVKLNPDEDKQNVLLAGMSDKKIVQWDMNTGQITQEYDQHLGAVNTI
TFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNANWLAAQSLDNQ
ILIYSTREKFQLNKRKRFGGHIVAGYACQVNFSPDGQYVMSGDGEGKCWFWDWKTCKVYR
TLKCHEGVCIGCEWHPLEQSKVATCGWDGMIKYWD
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atggatctccttcaccaatactcagacggcgacgatcccgactccccctctgaaaaccct
agctcccctccgcgcctcctcccgggacgctccgccgcgcccaacgtcgacgacaccatg
ctggccctcaccgtcgcctcctcctcctcggccctctcgcggcccatcgaccctacccag
cacctggtgggcttcaacccctcctacgaccagctctgggcccccatccagggcccggcc
caccccttcgccaaggacggcatcgcccagggcatgcgcaaccacaagctcggcttcgtc
gaggacgcctccatcgaacccttcctcttcgacgagcagtacaacaccttccacaagttc
ggctacgccgccgaccccgccgccaacaacttcgtcggcgacctcgacgcgctacgcgac
aacaacgccgtctccgtctacaacatcccccgccacgagcataagaaacgccgcattgag
gccaagcagaagaagaaatcagaggaagacgacgacggcgacgtcaacgaggagatcgaa
aacccggcctcggaggcgtggataatgaagaacaagaagagcccttgggcagggaagaag
gaagggttgcaaggagaattgactgaagaacagcagaagtatgcggaggagtatgcgaag
aagaaaggggaagagaagagtggtttgggaggggagaaagttgaggttgttaaagataag
agcacctttcatgggaaagaggagagggattaccaaggtaggtcttggattgcgcctccc
aaggatgcaaaggcgaatagtgatcgttgttatattcctaagagattgattcatacttgg
agtggacacaccaaaggggtttctgctattaggtttttccccaagtatggccacttgatt
ctctctgccggcatggataccaaggttaagatttgggatgttttcaactctggcaagtgt
atgaggacctacatgggacactcgaaagccgttagggatatttgtttcagcaatgatggg
accaagtttttgagtgctgggtatgacaagaatattaagtattgggataccgagacgggg
caggtgatatcgacatttgccaccggcaaaattccttacgttgtgaagcttaatccggat
gaggataagcagaatgttttgttggctggaatgagtgataagaagattgttcagtgggat
atgaataccggccagataactcaggagtatgatcagcatttgggggctgtgaataccatc
acctttgttgataacaacaggaggtttgttacttccagtgatgataagtcactcagggta
tgggaattcggtattcctgtggttataaagtatattagtgaaccccacatgcactccatg
ccttccatttcgcttcaccccaatgccaattggcttgctgcgcagagcttggataaccag
atacttatttatagcactagggagaagtttcaacttaacaagaggaagagatttggtgga
catattgtggctggatatgcatgtcaggtcaatttttctccggatggacaatatgtcatg
tcgggggatggtgaggggaagtgttggttctgggactggaagacttgcaaggtctacaga
actctcaagtgtcacgaaggtgtttgcattggttgcgagtggcatcccttggaacagagc
aaggtagcgacatgtggctgggatgggatgattaagtactgggactag
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