Glycine soja (wild soybean): 114403259
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Entry
114403259 CDS
T06057
Name
(RefSeq) polyadenylate-binding protein 3-like
KO
K13126
polyadenylate-binding protein
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03015
mRNA surveillance pathway
gsj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114403259
09123 Folding, sorting and degradation
03018 RNA degradation
114403259
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114403259
03041 Spliceosome [BR:
gsj03041
]
114403259
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
114403259
mRNA cycle factors
Stress granule specific factors
114403259
Spliceosome [BR:
gsj03041
]
Complex C
Other components
Complex C specific factors
114403259
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_3
RRM_RdRP1_2
RRM_7
RRM_YTH1
Motif
Other DBs
NCBI-GeneID:
114403259
NCBI-ProteinID:
XP_028221896
LinkDB
All DBs
Position
20:complement(43965372..43969693)
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AA seq
652 aa
AA seq
DB search
MAAAISSPMAQSVAAAATPVIAPGVALGGGPFANASLYVGDLEGNVNEEQLYDLFSQVAQ
IASIRVCRDQTKRSSLGYAYVNFANAQDASNAMELLNFTPLNGKPIRIMFSQRDPSIRKS
GHGNVFIKNLDTSIDNKALHDTFAAFGTVLSCKVALDSSGQSKGYGFVQFDNEEAAQNAI
KRLNGMLINDKQVYVGLFIRRQEREQTNGSPKFTNVYVKNLSETYTDEDLKKLFGPYGTI
TSATVMKDVNGKSRCFGFVNFQNPDSAAAAVERLNGTTINNDRVLYVGRAQRKAEREAEL
KAKIEQERISRYEKLQGANLYLKNLDDSFSDEKLKDLFSEFGTITSCKVMIDSNGRSKGS
GFVSFSTPEEASKALNEMNGKLIGRKPLYVAVAQRKEERKAHLQAQFAQIRAPGGMAPLP
AGIPLYHPGAPRLAPQQLYYGQGTPGFMPPQPAGFSFQQQILPGMRPGVAPNFIMPYHLQ
RQGQLGQRTGVRRNGNFQQVQQNQMLHRNSNQGFRYMPNGRNGMDPSLVPHGLMGPMMPM
PFDGSGVTAAPNDNQRPGALSTTLASALASATPENQRMMLGEHLYPLVERLAPNQYTAKV
TGMLLEMDQSEVINLIESPEDLKTKVSEAMQVLHEVASGSEVDQLGSMSLNE
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcgatttcttcaccgatggctcagtctgtggcggcggcggcgactccagta
atagctccgggagtcgcattgggcggaggtccctttgcgaatgcgtctctgtacgtgggc
gatctcgaggggaatgtaaatgaggagcaactttatgatctgttcagccaggtggctcag
attgcttcaattagggtttgcagggatcagaccaagcgatcctctcttggttatgcctat
gtcaactttgccaacgctcaggacgcatccaatgccatggaacttctgaacttcactcct
ctgaatggaaaaccgattcgaattatgttttcccaacgtgatccaagcattcggaaaagc
ggacatggcaatgtgttcattaagaacctggatacatcaattgataacaaggcattgcat
gacacttttgctgcctttggcactgtactttcttgtaaggtggctcttgacagcagtggc
cagtcaaaagggtatggttttgttcagtttgacaatgaagaggctgcccagaatgcaatc
aaacgattgaacggcatgttgataaatgataaacaagtctacgttggactctttattcgg
cgccaggaaagggagcagacaaatggatcacccaagttcactaatgtatatgtgaaaaat
ttgtctgaaacatatactgatgaggacctgaagaagctatttggcccctatggtacaata
accagtgcaacagttatgaaagatgtgaatgggaagtctagatgttttggttttgtgaat
ttccagaatccggattcagcagctgctgcagttgagaggttaaatggaactactattaac
aatgacagggttttatatgtggggagagctcagaggaaagcagaaagagaggccgagttg
aaagcaaaaattgagcaggaaagaatcagtagatatgaaaaattacaaggtgctaatttg
tacctgaaaaatcttgatgacagtttcagtgatgagaagttgaaggatctattttctgag
tttggaactataacatcttgcaaggtgatgattgattcaaatggacggagtaaggggtct
ggttttgtttccttttctactcctgaggaagcaagtaaagctttgaatgaaatgaatggc
aagttgattggacgaaagcctctatatgttgctgtggcccagcgcaaagaagagaggaag
gctcatctacaggctcaatttgctcaaattcgagcacctggtggaatggcacctctgcct
gctggtattcctttatatcatccaggggcaccgagacttgccccccaacagttgtattat
ggtcaaggcacacctggctttatgccaccacagcctgctggattttctttccagcagcaa
atcttgcctggaatgcggcctggtgtcgcccccaatttcattatgccttaccaccttcag
agacagggtcagcttgggcagaggacgggtgttcgtagaaatggaaacttccaacaggtg
caacagaaccagatgctacatcgtaactccaaccaaggatttagatacatgcccaatggt
cgaaatggcatggatccatctttagttcctcacggtcttatgggtcccatgatgcctatg
ccctttgatggttctggagtcactgcagcccctaatgataatcagcgtcctggagcattg
tctaccacacttgcctcagctcttgcctctgctaccccagaaaatcagcgcatgatgttg
ggtgaacatctatatccccttgtggaacgactcgcaccaaaccaatatacagcaaaggtg
acagggatgttgctggaaatggaccagtcagaagtaatcaatctcattgaatctcctgag
gacctgaagacaaaggtgtcggaggcaatgcaggtcctgcatgaggttgcatctggttct
gaagttgatcagcttggctcgatgtcgttgaatgaatga
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