Glycine soja (wild soybean): 114403271
Help
Entry
114403271 CDS
T06057
Name
(RefSeq) pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03040
Spliceosome
gsj04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114403271
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
114403271
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gsj03041
]
114403271
04121 Ubiquitin system [BR:
gsj04121
]
114403271
03400 DNA repair and recombination proteins [BR:
gsj03400
]
114403271
Enzymes [BR:
gsj01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
114403271
Spliceosome [BR:
gsj03041
]
Complex B
Other components
Prp19 complex
114403271
Complex C
Prp19-CDC5 complex
114403271
Ubiquitin system [BR:
gsj04121
]
Ubiquitin ligases (E3)
U-box type E3
114403271
DNA repair and recombination proteins [BR:
gsj03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
114403271
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_MABP1-WDR62_2nd
WDR55
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_WDR19_1st
Beta-prop_SPT8
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_DCAF4
PEP5_VPS11_N
Beta-prop_DCAF12
PROPPIN
U-box
WD40_like
PAS_11
zf-Nse
PUMA_CC
V_ATPase_I_N
Motif
Other DBs
NCBI-GeneID:
114403271
NCBI-ProteinID:
XP_028221914
LinkDB
All DBs
Position
20:complement(34705597..34714417)
Genome browser
AA seq
525 aa
AA seq
DB search
MNCSISGEVPEEPVVSRNSGLLFEKRLIERHISDYGKCPITGEPLTMDDIVPIKTGKIVK
PRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARSLLAQAERQFPVSAPNAITANAPVLSNGKRAAEDEDLAPGAKKIHPGISSSIIS
ELTDCNAALSQQRKKRQIPPTLAPVEALEAYTQISSHPFHKTNKQGIISLDILYSKDLIA
TGGIDTNAVIFDRPSGQILSTLSGHSKKVTSVKFVAQGESFLTASADKTVRLWQGSDDGN
YNCRHILKDHSAEVQAVTVHATNNYFVTASLDGSWCFYELSSGTCLTQVYDTSGSSEGYT
SAAFHPDGLILGTGTTESLVKIWDVKSQANVARFDGHAGPVTAISFSENGYFLATAAHDG
VKLWDLRKLKNFRNFAPYDSETPTSSVEFDHSGSYLAVAGSDIRIYQVANVKSEWNCIKT
FPDLSGTGKNTCVKFGPDSKYIAVGSMDRNLRIFGFPGEDAPTES
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgaattgctccatctccggcgaagttccggaagagcccgtcgtgtctcggaactccggt
ctcctcttcgagaagcgtttgattgagcgacacatttcggattatgggaagtgtccaatt
actggagaaccacttactatggacgacattgtaccaatcaagacaggcaagatagtgaaa
cccagacctgttcaggcagctagcatccctggcatgcttggaatgttccaaaatgaatgg
gatggattgatgctatctaattttgcattggagcaacaattgcacacagcaagacaagag
ctgagtcatgctttgtatcagcatgatgctgcttgccgagttattgcaagactaaaaaag
gaacgagatgaagctaggtccttacttgcacaagcagagaggcagttccctgtttctgca
ccaaatgccataacagcaaatgcccccgtcctgagcaatgggaaaagagctgctgaggat
gaggatctggctcctggtgcaaagaaaattcatcctggaatatcttctagcataatttct
gagctaactgattgcaatgctgctctttcccagcagagaaagaagcgacagattcctcca
actttggctcctgtcgaagctctagaggcatatacccagatatctagtcatccctttcac
aaaacaaacaaacaaggcattatatctcttgatatcctttattctaaggacttaattgca
actggaggtattgatacaaatgctgttatttttgaccgcccatcaggacagatattatct
acactcagtggtcactctaaaaaggtgaccagtgtaaagtttgtagctcagggtgaatca
ttcctaactgcttcagcagataagacagttcgtctatggcaagggtcagatgatggtaac
tataactgcaggcacatcttaaaggatcattcagctgaggtgcaagctgtcactgtccat
gcaaccaataattactttgtgactgcttcacttgatggctcttggtgcttttatgaactt
tcttcagggacgtgtttgactcaggtttacgacacttcaggttcttcggaagggtacaca
tctgcggcttttcatccggatggtctcattcttggaaccggcaccacagaatctcttgtc
aagatttgggacgtaaaaagtcaggcaaatgttgctaggtttgacggacatgctgggcca
gtaactgccatatctttctctgagaatggatacttccttgcgactgctgctcatgatggt
gttaagctttgggatctacgtaaactgaagaacttcaggaattttgctccatatgattcg
gaaacaccaacgagctccgtggagttcgaccacagtgggtcctacctagcagttgctggt
tctgatataaggatttaccaagttgcaaatgtgaaatctgaatggaactgtatcaaaacc
ttccctgatttatctggaacagggaagaacacgtgtgtaaaatttggtccagattctaaa
tacatagcagtgggatcaatggaccgaaatcttcggatattcggctttcccggtgaagat
gctcctactgagtcataa
DBGET
integrated database retrieval system
