Glycine soja (wild soybean): 114403362
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Entry
114403362 CDS
T06057
Name
(RefSeq) zinc finger CCCH domain-containing protein 40-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114403362
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gsj03041
]
114403362
Spliceosome [BR:
gsj03041
]
Complex B
Other components
Prp19-related factors
114403362
Complex C
114403362
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
RRM_YTH1
RRM_occluded
zf-CCCH_3
zf-CCCH
zf-CCCH_10
zf-CCCH_4
RRM_3
zf-CCCH_PARP12
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
114403362
NCBI-ProteinID:
XP_028222083
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Position
20:10188160..10192775
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AA seq
481 aa
AA seq
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MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTKAEYDKECKICTRPFTVFRWRPGR
DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNREYFAE
EHDRRARAGIDYESSYGKVRPNDTIMKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYR
HEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMSTLEAPEDESIKTLYVGGLDARVT
EQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGR
PQTSKPESDGSDQARPQASVAHSGLLPRAVISQQQNQDQAQGMLYYNNPPPPQQERSYYP
SMDPQRMGALVSSQDGPPGGPSGLGENKPGLEKQQMQHYAHPMMPPQPGQYHQYYPPYGY
MPPPPPYHQYPPPPYNAAVAPSQPPAANHPYQHSMQPGSSQPGSSQAASAPAETGTSTSG
S
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atggcgcataggttgctgagagaccacgaagcagacggttgggagcgctccgatttcccc
atcatctgcgaatcctgcctcggcgacagcccctacgttcgaatgacaaaagcagagtat
gacaaggagtgcaagatttgtacacgtccattcactgtttttagatggagacctggtcga
gatgctagatataagaaaaccgagatctgtcagacatgtagtaaattgaaaaatgtctgt
caagtgtgccttctggatcttgaatatggactacctgttcaagttcgagacacggctctc
agtatcgattccaatgatgccattccaaagagtgatgttaacagggagtattttgctgaa
gagcatgaccgtagggctagagctggtatagattatgaatcctcttatggtaaagtacgc
ccaaatgatactatcatgaagcttcaaaggacaacaccatattacaaaagaaaccgagca
catatttgcagtttctacataaggggtgaatgtaccagaggagctgagtgcccttataga
catgagatgccagtaactggggaattgtctcaacaaaatattaaagatcgttactatggg
gtgaatgatccagtggctttgaagctacttggcaaggcaggagagatgtccaccctggag
gctcctgaggatgagagcattaaaacgctttatgttggtggacttgatgctagggtcact
gagcaggatttgcgggatcacttctatgcccatggagaaattgaatctatcaaaatggtt
ctccaacgggcttgtgcttttgtaacatatacaaccagagaaggtgcagaaaaggcagca
gaagaactctccaacaaactggttattaagggccttaggctaaagctgatgtggggcagg
cctcagacatcgaaacctgagtctgatggttctgatcaagctaggccgcaggcatctgta
gctcatagtggattgttgcctcgggcagttatatcacagcagcaaaaccaggaccaagcc
caaggaatgctttactataacaatcccccacctcctcagcaggaaagaagctactaccca
tcaatggatcctcaaagaatgggtgctcttgtttcatcccaagatggtcctcccggtggg
ccttctgggttgggggagaacaagcccggtttggagaagcagcaaatgcaacattatgcc
catccaatgatgcctcctcaacctggccaataccatcagtattatccaccatatggttat
atgccaccacctcccccttatcatcagtaccccccacctccatacaatgctgcagtggct
ccgtcccagccaccagccgcaaatcatccttatcagcattctatgcagccaggttcttca
cagccaggatcttcccaggctgcatctgcgccagctgaaactggaacatcaacatcaggg
tcatag
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