Glycine soja (wild soybean): 114403550
Help
Entry
114403550 CDS
T06057
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1-like
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03022
Basal transcription factors
gsj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
114403550
09124 Replication and repair
03420 Nucleotide excision repair
114403550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gsj03021
]
114403550
03400 DNA repair and recombination proteins [BR:
gsj03400
]
114403550
Transcription machinery [BR:
gsj03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
114403550
DNA repair and recombination proteins [BR:
gsj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
114403550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
SHOCT
Plant_vir_prot
Motif
Other DBs
NCBI-GeneID:
114403550
NCBI-ProteinID:
XP_028222369
LinkDB
All DBs
Position
20:46549573..46562166
Genome browser
AA seq
587 aa
AA seq
DB search
MSSRQVVKRAKYKTTVKDPGTPGVLKLTQDKFVFKPNDPTSKTKLDVEFRFIQGHKVTKE
GSKKPAWLNLIHAQGSYIFELETFSDLHVCRELVGVALNKQVPGEATKVISEEQLSPAEM
ALKIKLLQEDSKLQRLHKELVASGKLTESEFWATKKKMLDQDESRKLKQQIGFKNSLIFD
TKPMSDGRINQVKFQLTPEIKYQIFALKPAVHQAFLNFVPRKMNEVDFWNKYFKAEYLHS
TKNAVAAAAEAAEDEDLAVFLKDDEILEIEARKKVRRVDPTLDMEADQGDDYTHLPDHGI
FRDGSKDISEAQNSLYKRTLLQDLNRQGAVVLEGKTLDMEMEHPRTVAEILARRKQECDG
VVDEERQNRISKMTLIDDLQAQDNHPYAPLCIKDPRDYFDFQQANAVKTLDDSQTGMEQM
KCSLGSEEAYGSLRASISKIKTTGLRDPLFSPDVALKVLNGLTKNISSPKYHLGRSSQGS
VLDILPNTTKETLLDHWVCSQELLRHFWSSYPITTQNLVNKTRRLKESISQIYSKLEDIK
VSAESDLRHHVSLVVHPMQQALNAALLHYEADIRKRNARGQKPNGYV
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgcggcaagtggtgaagcgtgccaaatacaaaaccactgtcaaagaccctggc
acccccggcgtcctcaaattgactcaagataagttcgttttcaagccgaatgatcctacc
tcgaaaaccaagctcgatgtggagttcagatttattcagggtcataaagtcactaaagag
ggatcaaagaaaccagcatggcttaatcttatccatgcacagggaagttacatctttgag
ttagaaactttttcagatcttcatgtttgccgggaattggtgggtgttgcccttaacaag
caagtgcctggagaagctacaaaagttatttctgaggaacagctgagccctgctgaaatg
gcactgaagataaagctattgcaggaagatagcaagttgcagaggcttcataaggaactt
gtggctagtggtaagcttacagaatcagaattttgggctacaaagaagaaaatgctggat
caagatgaaagcagaaagttaaaacaacagattggttttaaaaattctttgatctttgac
acaaagcctatgagtgatggacggataaaccaggttaaatttcagttgacgccagagata
aaatatcagatttttgccctcaaacctgccgtccaccaggcattcctgaattttgtacct
aggaaaatgaatgaggtagatttctggaataaatacttcaaagctgagtatctccatagc
accaaaaatgctgttgcagcagctgctgaggctgctgaagatgaggatcttgctgttttt
ctgaaagatgatgagatattggaaattgaagctcgaaagaaggttcgacgggttgatcca
actttagacatggaagcagaccaaggagatgattacacacatcttcctgatcatgggatt
ttccgagacggtagcaaggatatatctgaagcccaaaattctttgtataagagaacattg
ttgcaagatcttaatagacaaggtgcagttgttcttgaaggaaaaactttagatatggag
atggaacacccaagaacagtagcagaaattcttgctcggagaaaacaggaatgtgatggg
gttgtagatgaggagagacaaaacagaatttctaagatgaccctgattgatgatcttcag
gcacaagataatcatccgtatgcaccactctgtatcaaggatcctcgtgactattttgat
ttccaacaagctaatgctgtaaaaactttggatgattctcaaactggaatggagcaaatg
aaatgcagtttgggttctgaggaagcctatggctctttgagggcatcaatatctaaaata
aaaactacaggattaagggatcctctctttagtcctgatgttgctcttaaggtccttaac
ggattgactaaaaatatctcaagtcccaaatatcatcttgggagaagttctcaaggtagt
gtccttgatatattgcccaatacaactaaggagacactactagatcattgggtgtgcagt
caggaattgctgaggcacttttggtcttcatatccaattacaacacagaaccttgttaat
aagacacgaagactgaaagaatccatatcacaaatatattctaaacttgaggacataaag
gtatctgctgagtcagacctgcgacaccatgtttcccttgttgtccatcctatgcagcag
gctctgaatgctgccttgttacactatgaggctgacattaggaaaagaaatgcaagagga
cagaagcctaacggttatgtttag
DBGET
integrated database retrieval system
