Glycine soja (wild soybean): 114403582
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Entry
114403582 CDS
T06057
Name
(RefSeq) pre-mRNA-processing protein 40A-like isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114403582
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gsj03041
]
114403582
Spliceosome [BR:
gsj03041
]
Complex A
U1 snRNP components
U1 related factors
114403582
Complex B
114403582
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
FF_RHG35_4th
SMODS
Motif
Other DBs
NCBI-GeneID:
114403582
NCBI-ProteinID:
XP_028222412
LinkDB
All DBs
Position
20:complement(40536036..40563232)
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AA seq
1030 aa
AA seq
DB search
MSNNPQYPGLQPLRPPIAGSLDPPRNFVPPMPVQFRPAVPTQQSQQFISMPSQHYQHQPV
GPGGVPLIGVGIPPQNQQPQFSQPIQQLPPRPSPQLPPPSQAIPMPVARPNMHIPSESMM
QQSDSQAHSQAPNGYTPGLGGPGMPLSSSYTFAPSTYGQVQANFNSTGQFQPVPQIHALT
GSSSQSITTGATLQSNGGQPLVTTVMPLATIAQPQLTKNGPTDWIEHTSATGRTFYYNKK
TKVSSWEKPFELMTPIERVDATTNWKEYTSPDGRKYYYNKITNESKWSIPEELKLAREQV
EKAIVSGSRPEALLNSHPQPSPTPSATEATPNTDNSTLPSQGEPSSPVSVAPVVTTSISN
PQSEMPSGPSLSTSANAITGAKVDELEAPVNTVTPSDTCVGSDKAVVTDINTAVTPMNDV
NNDSAQDTLGSADRVPVEDKEDGKNDLIGEKSNDVAAETKAVEPEPPVYANKMEAKDAFK
ALLESVNVGSDWTWDRSMRLIINDKRYGALKTLVERKQAFNEYLNQRKKQEAEEKRMKQK
KAREDFKKMLEESTDLTSSTRWSKAVSIFENDERFKAVERDRDRRDMFESFLEELLNKER
AKVQEERKRNIMEYRKFLESCDFIKASTQWRKVQDRLEADERCSRLEKIDRLEIFQDYLR
DLEKEEEEQKKIQKEEVRKTERKNREEFRKLMGEHIASGILTAKTHWRDYYTKVKDLHAY
VAVASNTSGSTPKDLFEDVAEELEKQYHEEKSRIKDAVKLTKITLSSTLTFEDFKSVLLK
DISTPPISDFNLKLVFDELLERVKEKEEKEAKKRKRLADDFFHLLHSTKDFTVSSKWEDC
RPLVEDSQEFRSIGDESLCKEVFEEYIAQLKEEAKENERKRKEERAKKEKDREERERRKG
KQRKEKEGGRERGKDEAHKKDKADSDSMELTEIQTSKENKRSEDDNRKQRKKRQSPVYEM
DKEKTKKSHGHGSDSKKSRRHASGHESDEGRHKRHKRDHRREGDLEDGEFGDDHVDRWFC
TEEFATRMKG
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaataatccgcaatatccaggcttacagcctcttcggcctcccattgctggttca
ctggatcctccgcgcaattttgttccgcctatgcctgttcaatttcgccctgctgttcct
acacaacagtctcagcagttcatttccatgccttctcaacattaccaacatcaacctgtt
ggtccgggcggtgttcccctgattggtgttggaatacctccccaaaatcaacagccacaa
ttttctcaaccaattcaacagttacccccgagacctagtccgcagttaccacccccatca
caggcaattccaatgccggttgctcgtccaaacatgcacatcccatctgaatcaatgatg
cagcagtctgattctcaagcccattctcaagctcctaatgggtacacacctggtttaggt
ggtccgggaatgccactctcttcgtcatatacgtttgcaccatccacttatggtcaagtg
caggctaattttaattctactggccaattccaacctgttcctcaaattcatgctctcacg
ggttcttcatcccaaagcattactactggtgcaactcttcagagcaatggtggacaacct
ttggttacaactgttatgcctttggctaccattgcccagccacagctcactaagaatggc
cccacagattggattgagcatacctctgctaccggaagaacattttattacaataagaag
actaaagtatcaagctgggagaagccttttgaattgatgacgcctattgagagggtagat
gcaacaacaaactggaaggagtatactagtcctgatggaagaaagtattactacaacaag
atcacaaatgaatccaagtggtcaattcccgaggagctgaagttggcccgtgagcaagtt
gaaaaagcaattgtcagtggatctcgtcctgaagcattgctgaattcccatcctcaaccc
tctccgacaccttctgcaactgaagcaacacccaacacagataattcaactttacccagt
caaggagaaccatcaagtcctgtttcagttgctccagttgttactacatctataagtaat
ccacaatctgagatgccttctggaccatctctgtctacttctgcaaatgctataactgga
gcaaaagtggacgaacttgaggcacctgtaaatactgtcacaccatcagatacttgtgtg
ggaagtgataaagctgttgttactgatattaacactgctgtaacaccaatgaatgatgtt
aacaatgattcagctcaagatactctaggttctgcagacagagttcctgtagaagataaa
gaagatggtaaaaatgatttgataggagagaaaagtaatgatgtggctgcagaaacaaag
gcagttgagccagaacctccagtttatgcaaataagatggaggctaaagatgcattcaaa
gcactcttggagtctgtaaatgttggatctgactggacttgggatcggtccatgcgttta
ataattaatgataaaaggtatggtgccttaaaaacacttgttgaaaggaagcaagctttc
aatgagtacttaaatcagaggaaaaaacaagaagccgaagaaaagcgtatgaaacagaaa
aaagcccgggaggattttaaaaaaatgttagaagaatccacggacttgacttcatccact
agatggagcaaagcagtgtctatatttgaaaatgatgaacgtttcaaggctgttgaacgt
gacagagatcgcagggatatgtttgaaagcttcttggaggaacttctaaacaaggaacga
gcaaaggtacaggaggaacggaagcgaaatataatggaatacaggaagtttttggaatct
tgtgactttataaaggctagtacacagtggcgaaaagttcaagatcgcttagaggctgat
gaaagatgttctcgtcttgaaaaaattgatcgcttggaaatattccaggactatttacgt
gatttagaaaaggaagaggaagagcagaagaagatacaaaaggaagaagtgagaaagaca
gaacgtaaaaaccgtgaggaattccgcaaattgatgggagaacatattgcttcaggcatt
cttacagcaaaaactcactggcgtgattattatacaaaggtgaaagatttacatgcttat
gtagcagtggcgtcaaacacctcaggttcaactccaaaagacttgtttgaagatgttgct
gaagagcttgagaaacaatatcatgaagaaaaaagtcgaataaaagatgcagtgaaattg
acaaagatcacattatcgtcaaccttgacttttgaagacttcaaatcagttttattaaaa
gacattagcactccaccaatatctgatttcaacttaaagctagtgtttgacgagctacta
gaacgcgtgaaggagaaggaggagaaggaagctaagaagcgtaaacgtcttgcagatgat
ttttttcatctgctacattctaccaaggactttactgtgtcttcaaagtgggaggactgt
agaccacttgttgaagatagccaagagttcaggtctattggagatgagagcctttgcaag
gaagtatttgaggagtacattgcacagctaaaagaagaggcaaaagagaatgagcggaaa
cgaaaagaggaaagggcaaagaaggaaaaagacagggaggaaagagaaagaaggaaaggg
aagcaaagaaaggaaaaagagggagggcgtgaaagagggaaagatgaggcacataagaag
gataaagcagacagtgacagtatggagttaactgaaatccaaacctccaaagaaaacaaa
aggtctgaagatgataatagaaaacaaagaaagaagcgtcaaagtcctgtgtatgaaatg
gataaagagaagactaagaaatctcatggtcatggtagtgacagcaagaagtcaagacgt
catgcatctggtcatgaatcagatgaaggacgacacaaaagacacaagagagaccaccgc
agagaaggagatcttgaagatggggaatttggtgatgatcatgtggatagatggttttgc
actgaagaatttgctactagaatgaaaggttaa
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