Glycine soja (wild soybean): 114405766
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Entry
114405766 CDS
T06057
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114405766
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114405766
03036 Chromosome and associated proteins [BR:
gsj03036
]
114405766
Enzymes [BR:
gsj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
114405766
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
114405766
mRNA degradation factors
5'-3' decay
Decapping complex
114405766
Chromosome and associated proteins [BR:
gsj03036
]
Eukaryotic type
Gene silencing
piRNA pathway
114405766
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
NA-iREase2
Aldedh
Motif
Other DBs
NCBI-GeneID:
114405766
NCBI-ProteinID:
XP_028224056
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All DBs
Position
3:1314789..1321561
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AA seq
502 aa
AA seq
DB search
MNHNNNNRARYPPGMGIGRGGFNPNLGQNPSLNQNPNLNQNHHAFQARPPYHHQQQQPQY
VQRHLLQPPPPQQQQQWLRRDANAVDEVEKTVQSEPMDSSSQDWKARLKIPPADTRYRTE
DVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTA
AFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDI
MRLYQPVHLLVGTPGRILDLAKKGVCILKDCAMLVMDEADKLLSPEFQPSIEQLIHFLPT
TRQILMFSATFPVTVKDFKDRYLRKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLF
SKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLV
CTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRI
EQELGTEIKQIPPQIDQAIYCR
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgaatcacaacaacaacaatagagcgaggtaccctcccgggatggggattggtcgcgga
ggtttcaatcccaacctgggccagaacccgagcctgaaccagaacccgaacctgaaccag
aatcatcacgcgttccaggctcggccgccgtaccaccaccagcaacaacagccgcagtat
gtgcagaggcatttgttgcagccgccgccgccgcagcagcagcagcagtggctgagaagg
gatgccaatgccgtcgacgaggtcgagaagaccgtgcagtccgaacccatggattcgagt
tcccaagattggaaagcaagactaaagattccaccagctgatactcgctataggacagag
gatgtaacggcaactaaaggaaatgagtttgaggattactttttgaagcgtgagctgctc
atgggaatatatgagaagggttttgaaaggccttctcccatccaagaagaaagcattccg
attgctcttactggtagtgacattcttgctagggctaagaacggaactggcaaaacagct
gcattttgcattcctgcattggaaaaaattgaccaggacaataatgttattcaagttgtt
atactggtcccaacccgagaattggcattgcagacttctcaagtgtgcaaagagcttgga
aagcacttgaaaattcaagttatggttacaacaggtggtaccagcctgaaagatgatata
atgcgcttatatcaaccagttcatttactagttggaactccaggaagaatattagatctt
gccaagaaaggtgtttgtattctgaaagattgtgctatgcttgttatggatgaggccgat
aagcttctgtccccagagtttcaaccttctatagagcagctgattcattttcttcctaca
actcgtcaaatcttgatgttttcagcaacatttcctgttactgtaaaggatttcaaggat
aggtatcttcgaaaaccttatgtcatcaaccttatggatgagctaactctgaaaggtatt
acacaattttatgcattcgtggaagagagacagaaagtccactgtctaaatactcttttt
tctaagctgcaaataaaccagtctatcatcttctgcaattcagtaaatcgggttgaactc
cttgccaagaaaatcacagaacttgggtattcatgtttctacattcatgcaaagatgttg
caagaccatcgtaacagagtgtttcatgacttccgcaatggcgcatgtcgaaatcttgtt
tgtactgatctttttactagaggaatagacattcaagcagtaaatgttgttattaatttt
gattttcccaagaatgcggagacttatttgcacagggttggtcgttcagggaggtttggg
caccttggtttagctgtgaacttgattacctatgaggatcgctttaatctatataggatt
gaacaagaacttggaactgaaataaagcagattcccccacaaattgatcaggcaatttat
tgccggtga
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