Glycine soja (wild soybean): 114406956
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Entry
114406956 CDS
T06057
Name
(RefSeq) pre-mRNA-processing factor 39-like isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
gsj
Glycine soja (wild soybean)
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gsj03041
]
114406956
Spliceosome [BR:
gsj03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
114406956
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Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_12
NRDE-2
TPR_16
TPR_MalT
Motif
Other DBs
NCBI-GeneID:
114406956
NCBI-ProteinID:
XP_028225641
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Position
3:39993131..40003567
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AA seq
829 aa
AA seq
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MGDSEAVVTEASAAEAYASAGYAETGSNPAPEAGATVDQSAGEAAQASSTYGYGYSNVGD
VNSYAGDPNSILQQAQFSATGESKPAGGAADSNEASAGVGSTAADSTMVSDYNSSVNDGV
AGAVTNTSGLENGNALENADGSADEKQQADGYAAALSAEEDRLWNIVRANSLDFTAWTSL
IEETEKAAEDNILKIRRVYDAFLAEFPLCYGYWKKYADHEARLGSIDKVVEVYERAVQGV
TYSVDMWLHYCIFAITTYGDPDTVRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQDWAR
LAVIYTRILENPNQQLDRYFSSFKELAGNRPLSELRTADEAAAVAGVASEATGQATEGEV
HPDGAERSPKSVSAGLTEAEELEKYIAIREEMYKKAKEFDSKIIGFETAIRRPYFHVRPL
NVGELENWHNYLDFIEREGDLSKIVKLYERCVIACANYPEYWIRYVLCMEASGSMDLANN
VLARATQVFVKRQPEIHIFCARFKEQTGDIDGARAAYQLVHTETSPGLLEAIIKHANMEY
RLEKMEDAFSLYEQAIAIEKGKEHSQTLPMLFAQYSRFVYLASGNAEKARQILVEGLENV
LLSKPLLEAILHFEAIQPLPKRVDIDFLESWVVKFIMPNSESPGVASATEREELSSIFLE
FLNLFGDVQSIKRAEDRHAKLFLPHRSMSELKKRHAEDFLASDKTKAPRSYSAQSPAQSG
MGAYPNAQNQWSNYGVQPQTWPPVTQAQGQQWTAGYTQQASYGAYAGYGGNYANSQLPTS
VPQSTAYGAYPPAYPAQPAVPQQNYAQPVAAAPAQQPAAVPQAYYGSYY
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atgggagatagcgaagcggtggttacggaagcatctgctgctgaggcatatgcttcggct
ggttatgctgagaccgggtcgaatcctgctcccgaggcaggtgctactgttgatcaatct
gctggagaagctgctcaggccagttcaacttatggttatggttattctaatgttggtgac
gtgaattcgtatgctggggatccgaattccatcctacagcaagctcaattcagtgcaact
ggtgagtccaagccagctggtggagcggctgattctaacgaggcctctgctggggttgga
agcacagctgctgactctactatggtatctgactacaattcgtctgtaaatgatggtgtt
gccggtgcagtgacaaatacttctggacttgaaaacgggaatgcgttggagaatgctgat
gggtcggctgatgagaaacagcaagcagatggttatgcagctgccttgtctgctgaagaa
gatcgactgtggaatatagtgagagctaattctttagatttcactgcctggacttccttg
attgaagagacagagaaggcagcagaggacaatattttgaagattcgaagagtctatgat
gcttttctagcagaatttcccttgtgctatggttattggaagaaatatgctgaccatgag
gcacgccttggctctattgataaagttgtcgaagtctacgagcgtgcggttcaaggggtt
acatattcagtggacatgtggttgcattattgcatatttgctataaccacatatggggat
ccagacactgttcgtaggctttttgaacgaggattagcttatgttggaacagattatctt
tcttttcccctctgggataaatacattgaatatgagtatatgcagcaggactgggcccgc
cttgccgtgatctacaccagaatattagagaacccaaatcaacaattagatcggtatttc
agcagcttcaaagagttagctggaaatcgacctttatcagagttacgaactgctgatgaa
gctgctgcagtggcaggagttgcttcagaggctactggccaagctactgagggagaggtt
catcctgatggtgcagagcgttctcctaaatctgtaagtgctggcttaacagaagcagaa
gagttggagaagtatatcgccattagagaagagatgtataagaaagctaaagagttcgat
tctaagatcattggttttgaaacagctatcaggaggccctactttcatgtacggcccctc
aatgttggagagcttgagaattggcataactatctggactttatagaaagggagggtgac
ttgagcaagattgtcaagttgtatgagagatgtgtcattgcatgtgccaattatcctgag
tattggatacgctatgttttgtgtatggaagccagtggaagcatggatcttgcaaataat
gttcttgctcgggcaacccaagtctttgttaagagacaaccagagatacatattttttgt
gctcggttcaaggagcagactggagatatagatggtgctagagctgcatatcaacttgtg
catactgaaacttctcctggtcttcttgaagcaattatcaaacatgccaatatggaatac
cgactggaaaaaatggaggatgccttctctttgtatgaacaggccattgccattgagaaa
ggaaaagaacattcacaaacattgccgatgttgtttgctcaatattctcgatttgtatat
ttggcttctgggaatgcagagaaggcaaggcagattctagttgaggggcttgagaatgtt
ttgttgtcaaagccactacttgaggctatattgcattttgaggctattcaacccttgcca
aagcgtgttgatattgactttctggagtcatgggttgtcaaattcataatgcctaactca
gagagtcctggtgtagcaagtgcaacagagcgtgaggaactttctagtatttttctggag
tttttaaatctctttggtgatgttcaatctatcaagagggctgaagataggcatgccaaa
ttgtttttgccacacagaagcatgtcagagttgaaaaaacgtcatgctgaggatttctta
gcttcagacaaaacaaaagcgccgagatcttattctgctcaatcacctgcccaatctggg
atgggtgcatatccaaatgcacagaaccagtggtctaattatggagttcaacctcaaact
tggcctccagttacacaagcacaagggcaacaatggactgctggctacacccaacaggct
tcctacggggcttatgctggatatgggggcaactatgcgaattctcaattgcctacatca
gttccacaaagtactgcatacggagcctatcctcctgcatatcctgcacagccggcggtt
cctcaacaaaactatgcacaacctgtggctgcagcccctgcacagcaacctgctgcggtt
cctcaagcctattacgggagttattattga
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