Glycine soja (wild soybean): 114407164
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Entry
114407164 CDS
T06057
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114407164
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gsj03021
]
114407164
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114407164
Transcription machinery [BR:
gsj03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
114407164
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
114407164
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Ribonuc_2-5A
Pcf11_C
Roughex
Motif
Other DBs
NCBI-GeneID:
114407164
NCBI-ProteinID:
XP_028225965
LinkDB
All DBs
Position
3:42008096..42014243
Genome browser
AA seq
1036 aa
AA seq
DB search
MSMESTRRSLDRSREPGPKKPRLIDELSARQLPQRTAAVTTLASTRFRANDRDSEISDLG
RGGGGGGYQPQPPPHQELVTQYKTALAELTFNSKPIITNLTIIAGENLSAAKAIAAAVCA
NIIEVPSDQKLPSLYLLDSIVKNIRRDYIKYFASRLPEVFCKAYRQVDPCVHSSMKHLFG
TWKGVFPPQSLQMIEKELGFAPAVNGSASVSATVRSDLQSQRPPHSIHVNPKYLERQRLQ
QSSRSKGVVSDMTGAVLNSNEDSERPDRAAARPWLDPRINMLNNQHTHRDAFNDSVTEKS
IDGSYGSSEYSSVISSNLVSGAGRTGSKLIDLGHDKTWFKTDGGDADTTSGQRNGFGLKR
SFSNQEAPKSMNLDAHRQPRQSITNLRNNVMSGNWKTSEEEFTRDEMNNGLIDHGPNVLS
NLSTDTWMTDDENLEGEDHLHLQITRPIGTKVDREISTVKKQLPGLGGHPPSSWQLQKHH
SIDKLNLKPDYSEGFVSTLSGLPTNASSLAVKKGNQSFMSNAVVGMTKFVGQQFDSGETE
SPSGQSPLRQQSPSLPGTVHHPHSMQNLANQELPPSLKTSQLLGGQIISQHIRDHSPTLR
PIVKVGNLRRSQEKDMQGPLSSMTSLRPKLQQKQLNPSQTEVTATTKLPQSKVSLTRGTS
EQLTTNNLSAAPVKTGIIPKKSITSNLDPRKRPSQTGVQPTQSGRPTTLISSGSAVASPS
SLDPLHNDSSTLPKKPKGKAGQPPQRLSTQPPASSNVSSSSAPILNAAKNNKPNPIANLL
STLVAKGLISAETESPTTVPSVAPKGSKDQTEIITTSCSLPVTSISGSAAVPVSSSEDEV
DAATKTCLASPQSTSTEIRNLIGFDFRPNVIREFHPSVIRELWDDIPHHCKVCGIKLKQE
ELFNRHLEWHATREHGPIKASRSWYAKSSDWIAGKAEYSSESEFNDSVDVHDEKTGSSQL
DTMVLADENQCLCVLCGELFEDVYCHERNEWMFKGTIYMNYSDVNSEMESGNVGPIIHAK
CLSENSIITNLVRPII
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atgagcatggagagcacgcgcagatcgttggacagatccagagaaccaggtcccaagaag
cctcgattgatcgacgaactcagcgcccgacagttacctcaacgcactgcggcagttact
acgctggcgtctacgaggtttcgagcaaatgacagagactccgaaatcagcgatttgggt
cgtggcggtggcggcggcgggtatcagccgcagcctccgccgcaccaagagcttgtgact
caatacaagaccgcacttgctgagctcactttcaattcgaagccgataattaccaacttg
actattattgcaggagagaatctctctgctgccaaggcaattgctgctgctgtttgtgct
aacattatagaggttccaagtgatcaaaaactgccatctctttacctcttagacagtatt
gttaagaacatcagacgggattatataaagtattttgcttccagactacctgaggtattc
tgcaaggcttacagacaggttgatccttgtgtgcattcaagtatgaaacatctttttgga
acttggaaaggagtctttcctcctcagtcccttcagatgattgagaaggaacttggcttt
gcacctgcagtcaatggttcggcttcagtgtctgctacagtcaggagtgatttgcagtca
caacgcccacctcatagtatccatgtgaatcccaagtatttagaaaggcagcgtcttcag
cagtcaagtaggagcaaaggagtagttagtgatatgactggagctgttttaaactcaaat
gaggattcggagaggccagatagagctgctgcacgaccctggctggatccgaggattaac
atgcttaataatcagcacacacacagagatgcatttaatgattctgttactgaaaagagc
attgatggatcatacggaagcagtgaatatagttctgtcatttcaagtaatttggtctca
ggggctggaagaactggaagtaagctcattgatttaggacatgacaaaacatggttcaaa
acagatgggggtgatgcagatactacatctgggcaaagaaatggttttggtctcaagcgt
agtttttcaaatcaagaagcaccaaagtccatgaatttggatgcacatcgtcagccaaga
caaagcataactaacttacggaacaatgtgatgtcaggtaactggaaaacttctgaagaa
gagttcacacgggatgagatgaacaatggtttgattgatcatggacccaatgtattaagc
aatttgagcacagacacatggatgactgatgatgaaaatttggaaggtgaagatcacctc
cacctccaaatcacacgcccaattgggacaaaggtcgatagagaaatatccactgttaag
aaacaactacctggtttggggggccatccaccatcatcatggcaattgcagaagcaccac
tcaattgataagttgaatctaaagccagattactctgaaggatttgtgtccactcttagt
ggcttaccaaccaatgcaagttctttggctgtcaagaaggggaaccaatcctttatgtcc
aatgcagtagtaggaatgaccaaatttgtgggacaacaatttgattcgggtgaaactgaa
tccccttctgggcagtcacctttgcggcaacagtctccatcactgccaggaacagtacac
caccctcattcaatgcaaaacttggctaaccaagaattgccaccgagtctcaaaacctct
caacttttgggaggtcagataatcagtcagcatattagagatcactcacctacccttcgt
cccattgtaaaggttggtaacttgcgaagatcacaagaaaaggatatgcagggcccatta
tcttccatgacctctcttcgaccaaagcttcagcaaaagcagctgaacccatctcagact
gaagttactgctacaactaagctgccccagtctaaagtttctttaaccagaggaacttca
gaacagttgaccacaaataatttgtcagctgcacctgtcaaaactggaatcatccccaag
aaatcaattaccagtaatctggatccaaggaagcgtccatctcagactggggttcagcct
actcagtctggtaggcctaccacattaatttcttcagggtctgctgtggcatcaccatct
tcattagatcctctgcataatgattcatctacactgccaaaaaaacctaaaggaaaggct
ggacaaccaccacaaaggctttctactcaaccacctgcttcctctaatgttagcagttcc
tcagctccgatcttaaatgcggccaaaaataataaaccaaatccaattgcaaacctttta
agcacattggttgcaaagggtttgatatctgccgaaacagaatcaccaactacggtacca
agcgtggcaccaaagggatccaaagatcaaactgagatcattaccaccagttgttcttta
ccagttacatcaatttctggttctgcagctgtcccagtatcgtcttccgaagatgaggta
gatgctgctacaaaaacctgtcttgcctcacctcaatcaactagcacggaaatcagaaat
ctcattggctttgattttagacctaatgtaattcgagaattccacccatctgtaattagg
gaattatgggatgatatccctcatcattgcaaagtttgcggtattaagcttaaacaagaa
gaactctttaatagacacttggagtggcatgccacaagagaacatggtccaattaaggca
tcaagaagttggtatgcgaagtcaagtgattggattgctggcaaggcagaatattcatct
gagtccgagtttaatgattctgttgatgtacacgacgaaaaaacaggcagcagtcaattg
gatacgatggttctagcagatgaaaaccagtgtctgtgtgtattgtgcggcgagctattt
gaagatgtgtactgtcatgaaaggaatgagtggatgttcaaagggaccatttacatgaac
tattcagatgtcaatagtgagatggaaagtggaaatgtgggtcccatcattcatgccaaa
tgcttatcagagaactcaatcatcaccaatttggtaaggcctattatctga
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