Glycine soja (wild soybean): 114407314
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Entry
114407314 CDS
T06057
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114407314
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114407314
Enzymes [BR:
gsj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
114407314
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114407314
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
114407314
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
IG_AIR9
Motif
Other DBs
NCBI-GeneID:
114407314
NCBI-ProteinID:
XP_028226171
LinkDB
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Position
3:complement(43322666..43328946)
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AA seq
602 aa
AA seq
DB search
MLSVLRVHLPSDIPIVGCELTPYVLLRRPDKTVTTDDFPETAPLDGHFLRYKWYRVQSDK
KVAVCSVHPSEQAALQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAANENG
NEEEELYGRFNNSGSGSGSINTSLSSSASSASLTNGSAPVYPAAVTQRSGGETWFEVGQF
KTYTPTADDIGHVLKFECAVVDSETKLAVGHVNTLLTSRVIPAPSPSPRRLIPVDGMGHL
DADGRITSSGTFTVLSYNILSDAYASNDLYNYCPSWALSWPYRRQNLLREIVGYRADIIC
LQEVQSDHYEEFFSPELDKHGYYGLYKKKTNEVYNGNINTIDGCATFFRRDRFSHVKKYE
VEFNKAAQSLTDAVIPTTQKKTALNRLVKDNVALIVVLEAKVNNQPVDNPGKRQLLCVAN
THVNVHHDLKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSIPGSAPHALLAMGKVDP
SHPDLAVDPLNILRPHSKLVHQLPLVSAYSSFARTVGLGFEQHKGRLDNATNEPLFTNVT
RDFIGSLDYIFYTADSLVVESLLELLDEESLRKDTALPSPEWSSDHIAMLAEFRCCKNRS
RR
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgctgagcgtgctgcgcgtgcaccttccttctgatattcccattgtaggctgtgagctc
acgccttacgtgctcctacgccgacctgataagaccgttaccaccgatgatttcccggaa
accgccccgttagacggccatttcttgcgctacaagtggtatcgtgtacagagtgataaa
aaggttgctgtttgtagtgtacatccttctgagcaggccgcactgcagtgcctaggttgt
gtaaaggctaaaatacctgttgccaaaagttatcactgctctccaaagtgtttttcagat
gcatggcagcatcatcgtgtcttacatgaccgtgctgcaagtgcagctaatgaaaatgga
aatgaagaagaagagttatatgggcgatttaataattctggatctggatctggatcaatc
aataccagcttatcttcctctgcatcaagtgctagcttgacaaatgggtctgcacctgtg
tatccagcagctgtgacgcaacggagtggtggtgaaacttggtttgaagttggacaattt
aagacgtataccccaacagctgatgacattggacatgtccttaaattcgagtgtgctgta
gttgattcagagaccaaacttgctgtagggcatgtaaacactctactaacttcccgtgtc
attcctgctccctcgcctagcccgcgccgactgatacctgttgatgggatgggacatttg
gatgctgatgggcgtataacatcttcaggaacttttactgttctatcatacaacatatta
tctgatgcatatgcctcaaatgacctatacaattactgcccttcgtgggctctttcctgg
ccatatcgcaggcaaaatctgttacgagaaatagttggttaccgtgcagatattatttgt
cttcaggaggttcaaagtgatcattatgaagaatttttttctcctgaactggacaaacat
ggttattatggtctttacaaaaagaaaacaaatgaggtatacaatggaaacattaataca
attgatgggtgtgcaacatttttccgtagagacagattttcacatgtgaaaaaatatgag
gttgaatttaataaggctgcacagtctttaacagatgctgtgattccaaccactcagaag
aaaactgccttgaatagattggttaaggataatgttgcactaatagttgttttagaagca
aaagttaacaatcagcctgttgataatccagggaaaagacagcttctttgtgtggcaaat
acacatgtaaatgttcaccatgatttaaaggatgtcaaactgtggcaggtgcacactctc
ttgaaaggattggagaaaattgctgcaagtgcagatattccaatgttggtttgtggggac
tttaattcaattccaggaagtgctcctcatgcacttcttgcaatggggaaggtagatcca
tcgcatcctgatttagcagttgacccacttaatatattgcgtcctcacagcaagttggtt
caccagttgccactggtcagtgcttattcgtcttttgctagaacggttggtcttggattt
gagcagcataaagggagactagacaatgcaacaaatgaacctttattcacaaatgtaact
agagattttattggctctcttgattacatattttacacagcggattcattggttgtggag
tcattgttggagctattggatgaggaaagtttgaggaaagacacagcacttccttctcct
gaatggtcctctgatcatatagctatgttagctgagttccgctgctgcaagaatagatct
aggcgttga
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