Glycine soja (wild soybean): 114407330
Help
Entry
114407330 CDS
T06057
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like
KO
K14485
transport inhibitor response 1
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
114407330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gsj04121
]
114407330
Ubiquitin system [BR:
gsj04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
114407330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
F-box-like
LRR_4
LRR_NXF1-5
F-box
LRR_At1g61320_AtMIF1
LRR_8
Motif
Other DBs
NCBI-GeneID:
114407330
NCBI-ProteinID:
XP_028226191
LinkDB
All DBs
Position
3:43469335..43473193
Genome browser
AA seq
586 aa
AA seq
DB search
MQKMAYTFSFPEEVLEHVFSFIWSERDRNAISLVCKSWYEIERWCRRKVFVGNCYAVSPL
MVIKRFPELRSIALKGKPHFADFNLVPEGWGGYVCPWIAAMARAFPCLEEIRLKRMVITD
ESLELIAKSFKNFKVLVLTSCEGFTADGLAAIASNCRNLRELDLQESEVEDLSGHWLSHF
PDSYTSLVSLNISCLNHEVSLSALERLLGRCRNLRTLRLNRAVPLDRLPNLLLRCPQLVE
LGTGVYSTEMRPEVFSNLEAAFSGCKQLKSLSGFWDVLPSYLPAVYPICSRLTSLNLSYA
IIQSSDLIKLISQCPNLLRLWVLDYIEDAGLYALAASCKDLRELRVFPSEPFGLEPNVSL
TEQGLVSVSEGCPKLQSVLYFCRQMSNAALHTIARNRPNLTRFRLCIIEPRTPDYLTQEP
LDSGFGAIVEQCKDLQRLSLSGLLTDRVFEYIGTYAKKLEMLSVAFAGDSDLGLHHVLSG
CDNLRKLEIRDCPFGDKALLANAEKLETMRSLWMSSCSVSYGACKLLGQKMPRLNVEVID
ERGPPDSRPDDCPVEKLYIYRTVAGPRLDMPGFVWTMEDDSSLRLE
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaaatggcgtacacgttttcgtttccggaggaggtgctggagcacgtgttctcg
ttcatatggagcgagagggacaggaacgcgatctcgctggtgtgcaagtcgtggtacgag
atcgagaggtggtgcaggaggaaggttttcgtggggaactgctacgcggtgagccctttg
atggtgatcaagcgcttcccggagctgagatccattgcgctcaaagggaagccgcacttc
gcggacttcaatttggtccccgagggttggggaggttacgtttgcccctggatcgccgcc
atggcccgggccttcccctgcctcgaagagatcaggctcaagaggatggtcatcaccgac
gagagcttggagctcatcgctaagtccttcaagaacttcaaggtcttggttctcacttcc
tgtgagggttttactgccgatggacttgccgccattgcttccaactgcaggaatctaagg
gaattggacttgcaggagagtgaagtggaggaccttagtgggcactggctaagccatttt
cctgattcctacacttcattagtttcacttaacatctcttgcttaaaccatgaggtgagt
ttatctgcattagagcgtctgcttgggaggtgtcggaacctgcggaccctccgtctcaat
cgtgccgtgccccttgatagactacccaacctacttctccggtgtcctcagctggttgag
ttaggcacaggagtctattcaactgagatgcgaccggaggtcttctcaaacctggaagca
gcattttctggttgcaagcagttgaagagcttgtctggcttttgggatgtgcttccatcc
taccttccagctgtctaccccatctgctccaggctaacatcgctaaacttgagttatgct
attattcaaagctctgatcttattaagcttatcagtcaatgcccaaatttgttgcgatta
tgggtgctggattacatagaagatgctggtctttatgcccttgctgcatcatgtaaggat
ctaagggagttaagggtgtttccgtctgagccgtttggtttagaaccaaatgtttcattg
acagaacagggccttgtctctgtgtctgaaggttgccccaagctccaatcggttctatat
ttttgtcgacaaatgtcgaatgcagccctacatacaattgcacggaacaggcctaatttg
actcgttttaggctttgtattattgagcctcgaactcctgactatctaacccaggaaccc
ctggattctggttttggagctattgtagagcaatgcaaggatcttcaacgcctatccctg
tctggtcttcttactgaccgtgtttttgagtatattgggacttatgcgaagaagctggag
atgctatctgtggcttttgctggagatagtgatttgggacttcaccatgtgctgtcaggg
tgtgataatcttaggaagctggagataagggattgcccctttggtgacaaggcccttttg
gcaaatgctgaaaagctggagacaatgcgatccctttggatgtcctcctgctcagtgagt
tatggagcgtgtaagctactgggtcagaaaatgcccagactcaacgttgaagtcattgat
gaaagaggacctccagattcaaggccagatgattgtcctgttgagaagctttatatatac
aggactgttgctgggccaaggttggacatgcctggttttgtgtggacaatggaagatgat
tcttcactaaggcttgagtga
DBGET
integrated database retrieval system
