Glycine soja (wild soybean): 114407367
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Entry
114407367 CDS
T06057
Name
(RefSeq) sm-like protein LSM4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03018
RNA degradation
gsj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114407367
09123 Folding, sorting and degradation
03018 RNA degradation
114407367
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114407367
03041 Spliceosome [BR:
gsj03041
]
114407367
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114407367
mRNA degradation factors
5'-3' decay
Lsm complex
114407367
Spliceosome [BR:
gsj03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
114407367
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
114407367
NCBI-ProteinID:
XP_028226245
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Position
3:43715602..43718304
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AA seq
148 aa
AA seq
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MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRADRKPPGVGRGRGRGREEGPGGRPTKGIGRGLDD
GGARGAGGSRGRGGPSGKPGGNRGRGRG
NT seq
447 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctctttcccttctcaagactgcccaaggccaccctatgttggtggaactgaaa
aatggggagacatataacgggcatttggttaattgcgacacatggatgaacatccatctg
cgagaagtcatttgtacatctaaagacggagatagattttggaggatgcctgaatgctac
atacgaggcaatacaatcaagtaccttcgagtacctgatgaggttattgataaagttcaa
gaagaaaccaagagccgtgcagatcgcaaaccacctggtgttgggcgtggaaggggaaga
ggcagagaggaaggtcctggtgggcgcccaacaaaaggaattgggcgtggtcttgatgat
ggtggtgctaggggagctggaggaagccgaggcaggggtggtcccagtggaaagcctggt
ggaaacagagggcgtggtagaggttga
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