Glycine soja (wild soybean): 114408771
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Entry
114408771 CDS
T06057
Name
(RefSeq) WD repeat-containing protein ATCSA-1-like
KO
K10570
DNA excision repair protein ERCC-8
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03420
Nucleotide excision repair
gsj04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
114408771
09124 Replication and repair
03420 Nucleotide excision repair
114408771
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gsj04121
]
114408771
03400 DNA repair and recombination proteins [BR:
gsj03400
]
114408771
Ubiquitin system [BR:
gsj04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
114408771
DNA repair and recombination proteins [BR:
gsj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
114408771
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_RIG_2nd
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_EML
WD_LRWD1
Beta-prop_WDR75_1st
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_Nup120_160
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_NUP159_NUP214
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
114408771
NCBI-ProteinID:
XP_028227732
LinkDB
All DBs
Position
4:3630399..3634179
Genome browser
AA seq
450 aa
AA seq
DB search
MHKQTHRHVWKRIRDREAGKLRANHFANRIKSNRISQLQLSNHKDIVSPHKGAINSLQVD
STEGRYLLSAASDASVAVYDVQRPTVYEAGGGGGGGISKHSSIFVVDKQHQQGHKYAVST
AIWYPIDTGLFVTGSYDHHINVWDTNTTQVVVNFKMPGKVHRAAMSNLSTSHMLIAAATE
DVQVRLCDIASGAFAHTLSGHRDGVMTVEWSNSSEWVLVTGGCDGAIRFWDIRRAGCFQV
LDQSQTQLGRRPPILKRSMITKDSSTKLRAAQKKHANGSGSRQQPIGRVPSKGPMKQRLH
TGMLSTQDRATAHYGAVTGLKATEDGMYLLSAGSDSRLRLWDVESSCNTLVNFETVRLQI
NKPLQLATTQDSALVFVPCMRSVKAFDMWSGNTYTILRGHYECVNSCWFNQHDQELYTGG
NDRQILVWSPARSIADEMEGTAEDQDNWSS
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgcataagcaaacgcataggcatgtgtggaagcggatcagagacagggaagctgggaaa
ttgcgtgcaaaccatttcgcgaaccgcataaaatccaatcgcatttcgcaactccagttg
tccaatcacaaagacattgtctcacctcacaaaggcgccatcaactcccttcaggttgat
tcgacagagggaagatatttgctatccgctgcctccgatgcctcggtagcagtgtacgac
gtccaacgacccaccgtttacgaagcaggcggcggcggcggcggcggcatatcgaaacac
agctccatatttgtcgttgacaagcagcatcagcaaggccataaatatgcggtgtccaca
gctatttggtatcccattgacactggcttgttcgtcactggctcttacgatcatcacatt
aatgtttgggataccaataccacccaggtggtggtgaatttcaaaatgcctggaaaggtt
catagggctgcaatgtccaatttgtcaacgtctcacatgcttattgctgctgccactgag
gatgtccaagttcgcctttgtgatattgcttccggggcttttgctcacactttgtccggt
caccgtgatggagttatgactgttgaatggtctaattcaagtgaatgggtcttggttact
gggggatgtgatggtgcaatacgattttgggacatcagacgcgctggctgtttccaagtt
ttagatcaatctcagactcagcttggaagacgcccacctatactcaaacgctccatgata
actaaggattcaagtacaaaattgcgtgctgctcagaagaaacatgctaatggaagtggt
agcagacaacaaccaattggcagagttccatccaagggaccaatgaagcagagattacat
acaggaatgttgtctactcaggatcgtgcgactgctcattatggtgctgtgacagggtta
aaagcgactgaggatggcatgtatctactaagtgcagggtctgattctagattgaggttg
tgggatgttgaatctagctgcaacacacttgtgaactttgaaacagttcgtctgcaaata
aacaaacctcttcaactagccaccactcaagattcagcccttgtttttgttccatgcatg
agatctgtgaaagcatttgacatgtggtctgggaacacatacacgatattgcgtggtcac
tatgaatgtgtgaactcttgctggtttaatcaacatgatcaggaactgtacactggtgga
aatgatagacaaattcttgtctggtcacctgctagatcaatcgctgatgaaatggaagga
actgctgaggatcaggataactggagtagctga
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