Glycine soja (wild soybean): 114408910
Help
Entry
114408910 CDS
T06057
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
114408910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gsj03021
]
114408910
03036 Chromosome and associated proteins [BR:
gsj03036
]
114408910
Transcription machinery [BR:
gsj03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
114408910
Coactivators
SAGA/TFTC/STAGA complex
114408910
Chromosome and associated proteins [BR:
gsj03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
114408910
STAGA complex
114408910
TFTC complex
114408910
SAGA complex
114408910
SLIK complex
114408910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
WDR55
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_EML
ANAPC4_WD40
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
Beta-prop_SCAP
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_Vps41
Ge1_WD40
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
Beta-prop_Nup120_160
Nbas_N
Beta-prop_DCAF12
Cytochrom_D1
WD_LRWD1
Beta-prop_VPS8
LisH
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
114408910
NCBI-ProteinID:
XP_028227920
LinkDB
All DBs
Position
4:5008363..5018140
Genome browser
AA seq
669 aa
AA seq
DB search
MEDDKIVGYVTAFLKKKGFTQTEKIFQEEFQHNKSNTSNSLLEPDIANHLLAFSQLETGP
ARFHDGYSRLRTWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHVQEARNFFNTFREDH
EMMHLRDLQKLEGVLSPNHLEEMEFAHSLRKSKFNIKICEYSYELLLQHLHSTQSTTILG
IINEHINFQVTPGQPSLISDDPEAVTLTGSSQEAANLINQKEIHWGLLEDSLEERLEKAG
ALLLDSEKGEGEAKEGENDETKKRSIEGGKQGGASVKKVKKDKGGSATGKSAKPEASTVP
AAPRVKPELPLPVIPTEVEQSVLEDLRNRVQLSSVALPSVSFYTYINTHNGLSCSSISHD
GSLIAGGFSDSSLKVWDMAKLGQQASSLSQGENDTSQNEQIFGQGGGKRQYTLFQGHSGP
VYAASFSPVGDFILSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASSSH
DRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRVF
VGHRVMILSLAMSPDGRYMASGDEDGTIMMWDLSSGRCLTPLIGHTSCVWSLAFSSEGSI
IASGSADCTVKLWDVNASTKVSRAEEKSGSANSRLRSLKTLSTKSTPVYSLRFSRRNLLF
AAGALSKSG
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgacaaaatagttggatacgttacagcattccttaagaagaaaggcttcacg
caaaccgagaagattttccaagaagaattccaacacaacaaatccaacacttccaattca
cttctcgaacccgacattgccaaccacctcctcgccttctctcaattggagactggtcct
gctaggttccacgacggctacagcagactaagaacatggacttattcttcactcgatttg
tacaagcacgagttgctccgcgtactttatcctgtgtttatccactgctttatggatctt
gtcgccaaaggacacgttcaagaagctcggaacttcttcaatactttccgcgaagaccat
gaaatgatgcacttgcgtgaccttcagaagttggaaggagttctttctcctaaccatctt
gaggaaatggaattcgctcactcgcttagaaagagcaaattcaacataaagatatgtgag
tattcctatgagcttctgttgcaacatctacacagtacgcaatccaccactatacttggt
attatcaatgagcatattaactttcaagtaacccctggacaacctagcttaatttccgat
gacccggaagctgttaccctaactggaagcagccaggaagcagcaaacctgataaatcaa
aaagaaattcattgggggttgcttgaagactctcttgaagaacggctggagaaggccggg
gccttgcttttagactctgaaaagggtgaaggggaagcaaaagagggggagaatgatgag
actaagaaaagatccattgaaggaggaaagcaaggtggtgcttcagtcaaaaaagtaaaa
aaggacaagggtggaagtgcaactgggaaaagtgctaaaccagaagctagcactgtacct
gcagctcctcgagttaagccagaactccccttgcccgtaatcccaactgaagtggaacag
tccgtcctggaggatttaaggaaccgtgtacagcttagcagtgttgcattgccatcagtt
agcttttacacatatatcaatacacataatggtttaagctgttcatcaatatcccatgac
ggatcattgattgctggaggattttctgactcatcactgaaggtttgggatatggcaaag
cttggacaacaggccagttctctttcgcagggtgagaatgacacatcacaaaatgaacaa
atatttgggcaaggtggtgggaaaagacagtatacattgtttcaaggtcattcagggcct
gtttatgcagcctcttttagtcctgtcggggattttatcctttcatcctcagcagactca
acaattcgattatggagcacaaaacttaatgccaatcttgtttgttataagggtcacaat
taccctgtctgggatgttcagtttagtcctgtagggcattattttgccagctcgtcacat
gacagaactgctaggatttggtccatggacaggatacagcccttaagaataatggcaggg
cacttgtctgatgttgattgtgtgcaatggcatgccaactgcaactacattgcaactggt
tccagtgataaaacagttcgactatgggatgtgcagagtggtgagtgtgtccgggttttc
gttggtcacagggttatgattttgtctttggcaatgtctcctgatggtcgctatatggca
tctggcgatgaagatggcacgatcatgatgtgggacctctctagtggccgctgtctaaca
cctttgattggccacacatcatgtgtctggtcccttgctttcagttctgaaggttctatt
atagcatctggatctgctgattgcactgtaaaattgtgggatgtaaatgcgagcaccaag
gtttctagggctgaagaaaaaagtgggagtgctaacagcagacttagatcgctgaaaact
ttgtcaaccaaatctactccagtttactcattacggttttctcgaaggaatcttcttttt
gcggctggcgctctatcaaaaagtggttaa
DBGET
integrated database retrieval system
