Glycine soja (wild soybean): 114410167
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Entry
114410167 CDS
T06057
Name
(RefSeq) exosome complex exonuclease RRP44 homolog A-like isoform X1
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114410167
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114410167
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
114410167
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
Rrp44_S1
OB_HELZ2
CSD2
OB_RNB
Motif
Other DBs
NCBI-GeneID:
114410167
NCBI-ProteinID:
XP_028229791
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All DBs
Position
4:complement(48835453..48851356)
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AA seq
934 aa
AA seq
DB search
MLHNKSFVKKTKGGKVIKQVREHYLRDDIYCGAPFCTVCDSSSARLSASPSIILVVDTNV
VLNQIDLLENPAIDDVVVLSIVLEEVKNKNMSVYNRIRAICSNSMRKFFVFSNEYHRDTY
IKEMSGETKNDRNDRAIRVATQWYQNHLGGAVKVLLITNDKENKRKASEEGILAETVESY
VKSLDQPDLLDLLVRPASEDVDMEEVEDLRPSKRKVIYSEHKPMSEITSGLHRGIYHQGK
LRVNRYNPFEAYVGSESIGDEIIIYGRSNMNRAFDGDIVAAELLPQDQWQGVSSLSIAHE
EDEDEDEDVHLAPNSADDAPRTISQQGSSEQVNAVPSRPSGRIVGIIKRNWHSYCGSLEP
MPMPAGSGGIAHALFVSKDRRIPKIRIQTRQLENLLDKRIIVAVDSWDRQSRYPSGHYVR
TIGEIGDRDTESEVVLIENDINTRPFSSQVLACLPPLPWVVSSEDLSNPIRKDLRHLRVF
SVDPPGCKDIDDALHCHVLPNGNFEVGVHIADVTNFVYPGTPLDDEAAQRGTSVYLVERR
IDMLPKPLTEDICSLRSDVERLAFSVIWEMTPEADIIATSYTKSVIKSSAALSYVEAQAR
MDDSRLMDPITADLRNMNSLAKKMRLRRIERGALTLASAEVKFQIDTETHDPLDIGMYQI
REANQMVEEFMLAANVSVAQQILKSFPLCSLLRRHPTPTREMLEPLLRTAAAVGLHLDVS
SSKALADSLDHAVGDDPYFNKLIRILATRCMTQAVYFCSGDLSPPEYHHYGLAAPLYTHF
TSPIRRYADVIVHRLLAASLGISKLPPVFQDSLQLTSIADNLNYRHRNAQYAGRASVELH
TLIYFRKRPTDTEGRIVKIRSNGFFVFVPKYGIEGPVYLTKAEKGSGEWYVDEQQQKIKK
MDGSLSYNVLQTVQIHMEVVEPQPNRPKLQLTLI
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgctccacaacaagtccttcgtcaagaaaaccaaaggtggcaaagtcataaagcaagtg
cgggagcactacctgcgcgacgatatatactgtggcgcaccgttttgcaccgtttgcgat
tcttccagtgctcgcctcagtgcttcgccttccatcattctcgtcgtcgacaccaatgtc
gttctcaaccagattgatttgctggagaatccggcaattgacgatgttgtggtgttgtcc
attgtgttggaagaggttaagaacaagaacatgtctgtttacaaccgtataagagctatc
tgtagcaattccatgaggaagttctttgttttttccaatgaataccacagggatacatat
attaaggaaatgagtggggaaactaaaaatgataggaatgatagagctattcgagtggct
actcagtggtatcagaatcatcttggtggtgcagtaaaggtgttgcttataactaatgac
aaagagaacaaaaggaaggctagtgaagagggcattttggccgaaacagttgagtcatat
gtgaagtctttggaccaacctgatttacttgatctgcttgtgcggcctgcatctgaagat
gtggacatggaagaggttgaagatcttagaccatccaagaggaaagtcatctactccgag
cataagccgatgtcagaaattacttctggtttgcatcgtggaatatatcatcaagggaaa
cttcgtgttaaccgttataatccatttgaagcatatgttgggagtgagagcattggtgat
gaaataattatttatgggcgctcaaacatgaatcgagcatttgatggggatattgtggca
gctgaacttctgcctcaggaccagtggcaaggagtctcatctctatctatagcccatgaa
gaagacgaggatgaggatgaagatgttcatctagctccaaatagtgctgatgatgcacct
agaactatttctcagcagggttcttctgaacaagtaaatgctgtgcccagtcgtccttct
ggtcgtattgttggcattataaagagaaactggcattcgtattgtggatctttggagcca
atgcctatgcctgcagggagtggtggtattgcccatgccttgtttgtctccaaagatcgc
agaattcccaagattcgaatccaaacccgtcaacttgagaaccttttggataagaggatt
attgtggcagttgattcttgggatcgtcagtctcgatatccatcaggccattatgtgcga
actataggggagataggtgatagagatactgaaagcgaggtggttttgatagaaaatgat
ataaatacacggccattctcttcacaagtgctggcatgcttgccaccattgccatgggta
gtctcttctgaagatttgtctaatccaatcaggaaggatttgcgtcatctgcgtgtcttc
agtgtggaccctccaggctgcaaggatattgatgatgcactccactgtcacgtccttcca
aatggaaactttgaagttggagttcatattgctgatgtgactaattttgtttatcctggc
actccccttgatgatgaggctgcacaaaggggtacgtctgtctaccttgttgagcggcgg
atagacatgcttcccaaacctcttacggaggacatatgttctcttcgttctgatgtggaa
aggcttgcattctctgtcatatgggaaatgacacccgaagcagatattattgccacctca
tacacaaaaagtgtcataaaatcttctgcggcattgtcttatgttgaagcacaggcaagg
atggacgatagtcgattgatggatccgattactgcagatttgaggaatatgaatagttta
gctaagaaaatgagattaaggcgtattgagagaggagctttgactcttgcatctgctgag
gtcaaatttcaaattgacacggagactcatgacccacttgatattggaatgtaccagatc
cgggaggccaaccaaatggtggaggagtttatgcttgcagctaatgtttccgttgcacaa
caaattcttaaaagttttccattgtgctcattattaaggcgtcatccaacaccaacaaga
gagatgcttgaacccttactacggactgctgctgcagttggcttgcacttggatgtctcg
tcatcaaaagcgttggctgattctcttgaccatgctgtgggtgatgatccatacttcaat
aagttaatccgtatactggcaactaggtgcatgactcaggcagtttatttctgcagtggg
gatcttagccctccagaatatcatcattatgggcttgcagctcctttgtatacccatttc
acatcacctataagaagatatgcagatgtcattgtgcacaggctacttgctgcttcttta
gggatatccaagttaccacctgtatttcaagacagtctccagctcactagtattgcagac
aatttaaattatcggcacaggaatgcccagtatgcagggcgggcatctgtagagctacat
actctaatttatttcaggaagaggcctacagacacggagggtagaatagtgaaaataaga
tctaatggattttttgtgtttgttcccaaatatggcatagaaggacctgtatatttgaca
aaagcagaaaagggaagtggagaatggtatgtagatgagcaacagcagaagattaaaaag
atggatggtagcctttcatacaacgttttgcagacagtccaaattcacatggaggttgtg
gagcctcagcctaaccggccaaaacttcagcttaccctcatctag
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