Glycine soja (wild soybean): 114410225
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Entry
114410225 CDS
T06057
Name
(RefSeq) protein TRANSPARENT TESTA GLABRA 1-like
KO
K11805
DDB1- and CUL4-associated factor 7
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
114410225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gsj04121
]
114410225
03036 Chromosome and associated proteins [BR:
gsj03036
]
114410225
Ubiquitin system [BR:
gsj04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
114410225
Chromosome and associated proteins [BR:
gsj03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.3/1.5)
114410225
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
Beta-prop_THOC3
Beta-prop_WDR5
WD40_Prp19
Beta-prop_WDR3_1st
WD40
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
WD40_Gbeta
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
WDR55
Beta-prop_Aladin
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
ANAPC4_WD40
Beta-prop_WDR41
Beta-prop_WDR36-Utp21_1st
EIF3I
Beta-prop_WDR90_POC16_2nd
MIOS_WD40
WD40_MABP1-WDR62_2nd
WD40_RFWD3
Beta-prop_WDR19_1st
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
114410225
NCBI-ProteinID:
XP_028229870
LinkDB
All DBs
Position
4:49344224..49346561
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AA seq
335 aa
AA seq
DB search
MENSTQESHLRSENSVSYESPYPIYGMSFSPSHPHRLALGSFIEEYTNRVDILSFHPDTL
SLTPNPSLSFDHPYPPTKLMFHPRKPPSSSSDLLATSGDYLRLWEVRDNSVEAVSLFNNS
KTSEFCAPLTSFDWNDIDPNRIATSSIDTTCTIWDIERTLVETQLIAHDKEVYDIAWGEA
RVFASVSADGSVRIFDLRDKEHSTIIYESPHPDTPLLRLAWNKQDLRYMATILMDSNKVV
ILDIRSPTTPVAELERHRGSVNAIAWAPHSSTHICSAGDDTQALIWDLPTLASPTGIDPV
CMYSAGCEINQLQWSAVQPEWIAIAFANKMQLLKV
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atggagaattcgacccaagaatcccacctccgatccgaaaactccgtgagctacgaatcc
ccctacccaatctacggcatgtcgttctccccttcccacccccaccgcctggccctcggc
agcttcattgaagaatacaccaaccgcgttgacatcctctccttccaccccgacaccctc
tccctcacccccaacccttctctctcctttgaccacccttaccctcccaccaaactcatg
ttccacccccgcaaacccccctcctcctcctccgacctcctcgccacctccggcgactac
ctccgcctctgggaggtccgcgacaactccgtggaggccgtctcccttttcaacaacagc
aagaccagcgagttctgcgcccccttaacctccttcgactggaacgatatcgaccccaac
cgcatcgccacctccagcatcgacaccacctgcaccatctgggacatcgaacgcaccctc
gtcgaaacccaactcatcgcgcacgacaaagaggtctacgacatcgcatggggagaggcc
agagtcttcgcctccgtctccgccgacggctccgttagaatcttcgacctacgcgacaag
gagcactccaccatcatctacgagagcccccaccctgacacccctctgctccgtttggct
tggaacaaacaggacctgaggtacatggctactattttaatggacagtaataaagttgtg
attttggatattaggtctcccactacccctgttgcggagttagagaggcaccgtgggagt
gtgaacgctattgcttgggctcctcatagttccacgcatatttgttctgctggggatgat
actcaggctcttatttgggatttgcccactctggcttctcccactgggattgatcccgtg
tgtatgtattctgctggctgtgaaattaaccagctgcagtggtctgccgtgcagcccgaa
tggattgccattgcttttgccaacaagatgcagcttttgaaggtttga
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