Glycine soja (wild soybean): 114410497
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Entry
114410497 CDS
T06057
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03013
Nucleocytoplasmic transport
gsj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
114410497
03015 mRNA surveillance pathway
114410497
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114410497
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
114410497
mRNA cycle factors
P-body specific factors
114410497
SSDB
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GFIT
Motif
Pfam:
Smg4_UPF3
DUF6980
RRM_2
Motif
Other DBs
NCBI-GeneID:
114410497
NCBI-ProteinID:
XP_028230272
LinkDB
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Position
4:complement(51968404..51977765)
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AA seq
535 aa
AA seq
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MKVRSEREKTKVVIRHLPPSLTQSDLFQHIDSHFASRYNWFSFRPGNNSHKRQRHSRAYI
DFKCPDDVFEFAEFFDGHVFVNERGAQHKVIVEYAPSQRVPKPSAKKDGREGTIFKDPDY
LEFLKLIAKPQEHLPSAEIQLERKESEQVGASKETPIVTPLMEYIRQKRAVDSGMQASSA
VAKVCRRSRAALPGKPGSGNIKRGSEKKKYVQKDNAKSATRKESKNKSAFIVVPRRDDQF
AESSIKGISDIKTLHGVEGSISGIPLTSESGKKKFLLLKGKQQDIPSATEATVKQQNVQS
GNSPISTPAKQNQRREASGRLIRSILLNNEARQSQSTTGTQHKIQILSSENGQRPSRRFG
SRSGLNNQVSNHDAAQINSEGDSRRALDEKFIKRDLHGLGSSAKTEKRTRNKDRPDRGVW
TPLRRSDVSHAGNDYSSSSLAQPTQSNPESAEGEVKENVPSGNRGGEFSASAGGHGGNPS
IENGSQRNFIHHGASYVVKDDGAVSSISKGKPSKKSVGHSAHEKQVWVHKSSSGS
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtccgttcggaaagggaaaagacgaaagttgtgattaggcatttgcccccttct
ctcactcaatccgatctcttccaacacatcgattctcacttcgcttctcgctacaattgg
ttctccttccgtcccggcaacaacagtcacaagcgtcagaggcattcccgagcgtatata
gacttcaagtgtcccgatgacgttttcgagttcgccgagttctttgatggacacgttttt
gttaacgagcgaggtgcccagcataaagtgatagttgagtatgcaccttctcagcgtgtt
ccaaagccaagtgccaaaaaagatggacgtgaagggactatattcaaagatccagattat
cttgagttcctcaaactaattgcaaaacctcaagagcatcttcctagtgcagagatacaa
ttggaaagaaaagaatctgagcaagttggggccagcaaggaaacacctattgtcacaccc
ctgatggaatatattcgtcagaaacgtgctgttgacagtggtatgcaggcttcatcagca
gtggcaaaagtttgcagaagatctagagctgctttgcctggtaagcctggctcaggcaat
attaaacgtggatctgaaaagaaaaagtatgttcagaaggacaatgccaagagtgctact
cgcaaagagtcaaaaaacaagtcagcctttattgtggtcccccggcgagacgatcaattt
gctgaatcaagtataaaaggaatttctgacattaaaactttgcatggcgttgaaggttcc
atttctggaattccactgacttctgagtcaggaaagaaaaaattccttcttcttaaaggg
aaacagcaggacattcccagtgccactgaggccacagtaaaacagcaaaacgtacaatct
ggaaattctcctatttcaactcctgcaaaacagaaccagagacgtgaagctagtggaaga
ttgattaggagcatacttctaaataatgaagctcgtcaaagtcagtctacaactggtaca
caacataaaattcaaattttaagttctgagaatgggcagcgaccctctcgtcgttttggt
tcaaggtctgggttaaataatcaagtctcaaatcatgatgctgcacaaattaattccgaa
ggggattctagaagagcattggacgaaaagttcataaaaagggatcttcatggtttgggg
agcagtgccaaaacagaaaaacgtactagaaacaaggatagacctgatcgaggtgtttgg
acaccccttcgtcgttctgatgtttcgcatgctggtaacgactattcatcatcctcattg
gcacagcctactcagtcaaatcctgaatctgctgaaggagaagtaaaagaaaatgttcct
tctggaaacaggggaggtgaattctctgcttctgcaggtggacacggtggcaatccttca
attgagaatggttctcaaagaaattttattcatcatggagcttcctatgtagtgaaggat
gatggtgcagtcagtagtataagcaaagggaaaccttccaagaaaagtgttgggcatagt
gctcacgagaagcaagtctgggtccataaatcttcttcagggtcataa
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