Glycine soja (wild soybean): 114411964
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Entry
114411964 CDS
T06057
Name
(RefSeq) transducin beta-like protein 3
KO
K14555
U3 small nucleolar RNA-associated protein 13
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
114411964
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gsj03009
]
114411964
Ribosome biogenesis [BR:
gsj03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
114411964
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Utp13
Beta-prop_TEP1_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_TEP1_C
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_SPT8
ANAPC4_WD40
PEP5_VPS11_N
Beta-prop_Nup120_160
Beta-prop_DCAF12
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_WDR75_2nd
Ge1_WD40
Beta-prop_NWD2_C
WD40_like
WDR54
Beta-prop_Vps41
Cytochrom_D1
Beta-prop_NOL10_N
RAB3GAP2_N
Motif
Other DBs
NCBI-GeneID:
114411964
NCBI-ProteinID:
XP_028231517
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Position
5:3323121..3333436
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AA seq
883 aa
AA seq
DB search
MEPLRLKTNYRCVPALQQFYTGGPFVVSSDSSFIACACGESIKIVDSATAAIRSTLGADS
ESFTALALSPDDRLLFSSGHSRQIKVWDLSTLKCVRSWKGHEGPVMCMTCHPSGGLLATG
GADRKVLVWDVDGGYCTHYFKGHGGVVSCVMFHPDPEKQLLFSGSDDGGDHATVRVWDIS
KTKKKNCIATLDNHSSAVTSLALSEDGWTLLSAGRDKVVTLWDLHDYSSKKTVITNEAVE
AVCVLGSGSPFASSLDSYQQNLKKRDGSQIFYFITVGERGIVRIWNSKGAGCIFEQKTSD
VTANIDEDGSRRGFTSAVMLASDQGLLCVTADQQFLFYSLECTEELLQLNLTKRLVGYNE
EIVDMKFIGDDEKFLALATNLEQVRVYDLASMSCSYVLSGHTEIILCLDTCVSSSGKTLI
VTGSKDNSVRLWESESANCIGVGIGHMGAVGAIAFSKRKQDFFVSGSSDHTLKVWSMDGL
SDNMTMPINLKAKAVVAAHDKDINSVAVAPNDSLVCSGSQDRTACVWRLPDLVSVVVFKG
HKRGIWSVEFSPVDQCVVTASGDKTIRIWAISDGSCLKTFEGHTSSVLRALFVTRGTQIV
SCGADGLVKLWTVKTNECVATYDHHEDKVWALAVGRKTEKLATGGGDAVVNLWFDSTAAD
KEEAFRKEEEGVVKGQELENAVSDADYTKAIQIAFELRRPHRLFELFAELCRKREAEDHM
DRALKGLGSEELRILFNYIREWNTKPKLCYVSQFVLFRVFSIFPPTDIVQIKGIGEFLEG
LIPYSQRHFGRIDRLVRSTFLLDYILSGMSVIEPQVQPTESKAELLLQSEIDIPDKENGI
EKKDHTHEITASKKRKSNKSKHGSHKKVKNVAYNKVESIQLQA
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atggaacccctccgactgaagaccaactaccgctgcgtccccgctctgcagcagttctac
accggcggccccttcgtcgtctcatcggactcctccttcatcgcctgcgcctgcggcgag
tccatcaagatcgtcgattccgccaccgccgccatccgctccaccctcggcgccgactcc
gaatccttcaccgccttggctctcagccccgacgaccgcctcctcttctcctccggccac
tcccgccaaatcaaagtctgggacctgtccacgctcaagtgcgtccgctcctggaagggt
cacgagggtccggttatgtgcatgacgtgtcacccttctggagggttgcttgctactggt
ggagctgatagaaaggttcttgtgtgggatgtggatggtggttactgcacgcattacttt
aaaggtcacggtggtgtcgtttcttgtgttatgttccatcccgatcctgagaaacagctt
cttttttctggcagcgatgatggtggtgatcatgcaactgtaagggtttgggatatttcc
aagaccaagaaaaagaactgcattgcaacactagataatcatagctcagcagtgacttct
ttggcattatctgaagacggatggacactgcttagtgctggaagagataaggttgtaacg
ttgtgggaccttcatgattatagcagcaagaagactgtcattacaaatgaggcagttgaa
gctgtttgtgtacttggttctgggagtccttttgcttcatctctggattcatatcagcaa
aatttaaaaaaacgtgatggttcccaaatattctatttcattacagttggtgaacgaggc
attgtacgcatatggaattccaaaggtgcaggttgcatctttgagcaaaaaacttcagat
gttacagccaacatagatgaggatggctcacgtaggggtttcacttctgctgttatgctt
gcctcagatcaaggattgctttgtgtgactgcagatcagcagtttctgttttactctctg
gaatgcactgaagagttgttgcaattaaatctaaccaaaagacttgtgggatataatgaa
gagattgttgatatgaagtttattggggatgatgaaaaattccttgctctggctacaaat
cttgaacaggttcgagtttatgaccttgcatctatgtcatgttcgtatgtcttatctggt
cacactgaaattattctatgccttgacacctgtgtatcaagttctgggaaaacactgatt
gtaactggaagtaaagacaacagtgttaggttatgggaatcagaaagtgcaaactgcatt
ggagttggtattggtcacatgggagctgttggagccattgccttttcaaaaagaaagcaa
gatttctttgttagtggcagtagtgatcatactcttaaggtgtggagtatggatggcctc
tcagacaatatgacaatgccaattaatttaaaagcaaaagctgttgttgcagctcatgat
aaagatataaattccgtagctgttgctccaaatgatagtttagtatgtagtggttctcag
gatcgtacagcttgtgtttggagacttccagatctagtatcagtagttgtatttaaaggg
cataaaagaggaatttggtcagtagaattttctcctgttgatcaatgtgtagtaacagca
tctggtgataagacaataaggatatgggctatatctgatggctcctgtttgaagacattt
gaaggacacacgtcaagtgtgttaagagcattgtttgttactcgtggaacacaaattgtt
tcttgtggtgctgatggtttagtaaagctgtggactgtaaaaactaatgaatgtgttgct
acttatgatcatcatgaagacaaggtttgggccttggctgtaggcaggaaaacggaaaag
cttgcaactggtggcggagacgctgttgtcaatttatggtttgattccactgcagcagac
aaagaagaagcttttcgaaaagaggaagagggagttgtgaaaggtcaagagctagagaat
gctgtctcagatgctgactatactaaagcaatccaaatcgcatttgaactgcgcaggcct
cataggctttttgagctatttgcagaactttgcaggaagagagaggctgaagatcatatg
gacagagcacttaagggcttgggtagtgaagagcttcgtatattatttaactatattcga
gaatggaatacaaaaccaaagctttgttatgtttctcagttcgtgcttttcagagttttc
agcatctttcctccaacagatattgtccagattaaagggattggcgaatttcttgaaggt
cttatcccatatagtcagaggcattttggcaggatagacagacttgttagaagcacattt
ttgttagactacattctatcgggaatgtcagttattgaaccacaagttcaaccgacagaa
tcaaaggctgagttactgttgcagtctgaaattgacattccagacaaagaaaatggcatc
gagaagaaagatcatactcatgaaattaccgcttcaaagaaaaggaaatcaaacaaatca
aaacatggttcccataagaaagttaagaatgtagcttacaacaaggtcgaatctatacaa
ttacaggcatag
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