Glycine soja (wild soybean): 114412816
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Entry
114412816 CDS
T06057
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114412816
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gsj03041
]
114412816
Enzymes [BR:
gsj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114412816
Spliceosome [BR:
gsj03041
]
Complex C
Other components
Step II factors
114412816
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
WHD_HA2
AAA_22
DEAD
HA2_C
AAA_19
nSTAND_NTPase5
ABC_tran
SLFN-g3_helicase
cobW
AAA_16
nSTAND3
AAA_30
FtsK_SpoIIIE
AAA_29
ATPase_2
SRP54
PhoH
AAA_23
T2SSE
nSTAND1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
114412816
NCBI-ProteinID:
XP_028232679
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All DBs
Position
5:complement(35909018..35916044)
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AA seq
697 aa
AA seq
DB search
MVSLPIVQYEEKIIETVERNPVVVVIGETGSGKSTQLSQMLHRRGYGKIAITQPRRVAAV
SVARRVAHELGVQLGEEVGYAIRFEDRTSHSTRIKYLTDGVLLRESLANPELNEYSVIIL
DEAHERSLNTDILMGLMRRLVNIRSSDLKVLITSATLDGEKVSKFFADCPVLNVPGKLYP
VEVLYSRERPSSYLESSLKTALDIHIREPEGDILIFMTGQDDIEKLVSKLEDKVRALEEG
SCMDAIILPLHGSLPPELQVRVFSPPPPNCRRIIVATNIAETSLTVDGVVYVIDSGYVKQ
RQYNPSSGMYSLDVVQISKVQANQRAGRAGRTRPGKCYRLYPSRIYNDEFLDVTVPEIQR
SSLAGSVLYLKSLDLPDIDILKFDFLDPPSSESLQDALKQLFLIDAIDENGAITSIGQKM
AELPLEPSLAKTLMEANNYGCLYEALTVAAMLSAETTLLPGQRKTEKKRKHTISNLPDGS
GLGDHIQLLQIYECWDQTDFDIGWCKDNGLQVRGMLFVRDVRKQLSQIMQKISKGPLDVR
ANGKREEFRQDYRNLRKALCMGYANQLAERKMHHNGYRTLGFQAQVVQVHPSSVLSLDDL
GKFPDYVVYHELIATPRPYMRNVCAVEMRWVIPIINKLKSLDVYKLSSGGVHHVEEEPEK
KLPDFPKKDVEVASTADDRESRIQAARERFLARKGKK
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atggtttctcttcccatagttcaatatgaagagaaaatcatcgaaaccgttgagcgcaac
cccgtcgtcgtcgtcattggagagaccggttccggcaagagtactcaactctctcagatg
ctccaccgccgcggctacggtaaaatcgccatcactcagccccgtcgagtcgccgccgtc
tccgtcgccagacgagtcgcgcacgagctcggcgttcagctcggggaggaagtagggtac
gccattcggttcgaggataggacttcgcacagcacgcgcataaagtatcttactgatggt
gtccttctccgagaaagtttagctaatcctgaattgaatgagtattctgtgatcatattg
gacgaggctcatgaacggagtttaaacacggatatattgatggggctaatgagacgcttg
gtaaatatccgttcctccgatctcaaggttttgatcacgtctgctactcttgatggggaa
aaagtatctaagttctttgccgattgtcctgtattgaacgtcccgggaaagttgtatccg
gttgaggttctttatagccgtgagcgtccctcaagctaccttgagtcttcgctgaaaaca
gctcttgatatacatattcgtgaaccggaaggggatattttaatattcatgactggacag
gatgacatagagaagttggtatctaagttagaagataaggttcgtgctctcgaggaaggt
tcctgcatggatgctataatcctccccctacatggttctttgccccctgaattgcaggtg
cgcgtatttagtcctccacctccaaattgtagacgaatcattgttgcaacaaatattgct
gaaacttccttgactgttgatggtgtagtgtatgttattgactctgggtatgtgaagcaa
aggcagtataatccatctagtggcatgtattctcttgatgttgttcaaattagcaaagtg
caagctaaccagcgagcaggccgagctggacggacacgtcctgggaaatgctaccgtcta
tatccttcccgtatttacaatgatgagtttttggacgttacagttcctgaaattcagaga
tcttcccttgctggcagtgttctttacttgaagtcattggacctcccagatattgacatt
ctaaaatttgactttctggatcctccatcatctgagtccttacaagatgccttgaagcag
ttatttctgattgatgctattgatgaaaatggtgcaattacaagtattggacagaaaatg
gctgagcttcccttagaaccatcattggcaaaaactttaatggaggcaaacaattatggt
tgcttatatgaggctttgactgttgctgccatgttatcagctgaaactacattgctacca
gggcagaggaagactgagaagaagaggaaacatactatatctaaccttcctgatggttct
ggattgggtgatcacattcaattgctgcagatatacgagtgctgggatcaaactgatttt
gacattggctggtgcaaagataatggcttgcaggtgcgagggatgttgtttgtcagagac
gtccgtaagcagttatcccagataatgcagaaaatatcaaagggaccactggatgtaagg
gcaaatgggaaaagagaagagttcaggcaggattatcgaaatttgaggaaggctttatgt
atgggctatgcgaatcagctggctgaaagaaagatgcatcacaatggttatcgaactttg
ggtttccaagctcaagtagtccaggtgcatccgtcatctgtgttgagtcttgatgacctg
gggaagttcccagactatgttgtgtaccatgaactaattgctacgccacggccgtacatg
agaaatgtatgtgctgttgagatgagatgggttatacctattattaacaagctcaagagc
ctggatgtgtacaaattaagcagtggtggtgttcatcatgttgaggaggaacctgagaaa
aagcttccagattttcccaagaaggatgttgaggtggctagtactgctgatgaccgtgaa
agtagaatccaagctgctagagaacgatttcttgctcgtaaaggcaaaaaatga
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