Glycine soja (wild soybean): 114415239
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Entry
114415239 CDS
T06057
Name
(RefSeq) WD and tetratricopeptide repeats protein 1-like isoform X1
KO
K11807
WD and tetratricopeptide repeats protein 1
Organism
gsj
Glycine soja (wild soybean)
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gsj04121
]
114415239
Ubiquitin system [BR:
gsj04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
114415239
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_EIPR1
ANAPC4_WD40
Beta-prop_EML
Beta-prop_WDR35_TULP_N
WD40_MABP1-WDR62_2nd
Beta-prop_HPS5
Beta-prop_RIG_2nd
Beta-prop_SCAP
Beta-prop_IFT122_1st
TPR_2
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
114415239
NCBI-ProteinID:
XP_028235637
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Position
6:7524831..7540449
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AA seq
762 aa
AA seq
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MDSVPFRDGNIHTILDSRYLHSPLDVNHSLHTHSSLIRRLSQERELEGHTGCVNAVAWNS
KGSLLISGSDDQRINIWSYSGWKLLHSIDTGHTGNIFCTKFIPETSDELVASGAGDAEVR
LFNLSRLNGSGFSDNAIIAPSAYYQCHTRRVKKLAVENGNPNVVWSASEDGTLRQHDFRE
GTSCPPAGSSHQECRNILLDLRSGSKRSLADPPKQVLALKSCDISSTKPHLLLVGGSDAF
ARLYDRRMLPPLSSCQKRMSPPPCVNYFCPMHLSDRGHPSLHLTHVTFSPDGHEVLLSYS
GEHVYLMNVNHAGVKEMQYTSGDESKLMTYSPTINGSEMQPCVSNVFPNRFPIKKNIAAK
LDKCRKQIKYAKKSLDNGIPYYGIDACNEVLNGYSHIIGPALKHECLCTRAALLVKRKWK
NDAHMAIRDCYAARIIDNSSYKALYYMSEALSQLGRHEDALEFAVASHSLAPSKSEVAER
VANVKRDIALAEAEKNSQTNDGASRFDSRGGRILSLSDILYCPESNSDDPHDGSRSERDD
SDYDDELELDFETSISGDEGHDLESNILHGNLNLRIHGRGDSRDNADASGSCESPSSSSQ
NSRTSYQPEPAVDMKQRFVGHCNIGTDIKQASFLGQRGEYVASGSDDGRWFIWEKCTGRL
IKMLSGDESVVNCVQCHPFDFVVATSGIDSTIKIWTPTAPVPSSVAGGSAGPETGDVLVA
MESNQQKLSRSHNSILPLLESFRRQDFPEGSLRLHPFECAQS
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atggactccgttccgtttcgcgatggtaacatacacaccattctcgactcccgttatctt
cactctccactggatgttaatcatagtttgcacactcattcctcgctgattcggaggctt
tctcaagaaagggagttagagggccacactggctgtgtcaatgcggtggcttggaattcc
aaaggttcgttactgatatctggatcagatgatcaacggatcaatatttggagctattct
ggctggaaacttttacattcaattgacacaggacatacaggaaatatattctgtactaag
tttataccagaaacttctgatgagcttgtagcctctggagctggagatgctgaagtccgg
ttattcaatttgtctcgcttaaatgggagtggatttagtgacaatgccatcattgctcca
tctgcatattatcaatgccacactcgaagagtcaagaaattggctgttgaaaatggaaac
cccaatgtagtatggagtgctagtgaagatgggactctaaggcaacatgattttcgggaa
ggcacctcttgtcctccagctggatcttcacaccaagagtgtcgaaatattcttcttgac
ttaagaagtggatctaaaaggtcgcttgctgatcctcctaaacaagtccttgctttaaaa
tcttgtgatattagttcaactaaaccacatttgcttcttgttggtgggagtgacgccttc
gcacgcttatatgatagaaggatgcttccgcctcttagctcatgtcagaaaagaatgtct
ccacctccttgtgttaattatttctgtccaatgcatctttctgatcgtggacatccaagc
ttgcacttaactcatgttacattcagtcctgatgggcacgaggttctcctcagctatagt
ggagagcacgtttacttgatgaatgtaaatcatgctggagtgaaggagatgcaatatact
tcaggagatgaatcaaagctgatgacatactctccgacaattaatgggtcagagatgcag
ccttgtgtatctaatgtcttcccaaatagatttcctattaaaaagaacattgctgcaaag
cttgacaagtgcaggaaacaaataaaatatgctaagaaatcgttggacaatgggataccc
tattatggaattgatgcatgtaatgaggttttgaatggctatagccatattattgggcct
gcactgaaacatgaatgcttgtgtactcgtgctgcactattggtcaagaggaagtggaaa
aacgatgctcatatggctataagagactgctatgctgctaggataattgataattcctct
tacaaagcactatactatatgtcagaagcattgtcacagttgggtagacatgaagatgct
ttggagtttgctgttgcttcccattctttggccccatccaaatctgaagttgcagaaaga
gtagcgaatgtgaagagggacattgctttagctgaagctgaaaaaaatagtcagaccaat
gatggggcatcaaggtttgatagtaggggtggaagaatattatcattaagcgacatactc
tattgtcctgagtctaatagtgatgatccacatgatggttcaagatcagagagggatgat
tctgattacgatgacgaattggagttggactttgaaacatcaatatctggtgatgaggga
catgatcttgaatcaaatattcttcatggaaatttaaatcttagaattcatgggagaggt
gactccagagacaatgctgatgcaagtggctcatgtgaatcaccttcatcatcgtcacag
aacagtagaacttcttatcagcctgaaccagctgttgatatgaaacagagatttgttggc
cactgcaatattgggactgacataaaacaagccagttttcttggtcaaagaggtgaatat
gttgctagtggaagtgatgatggcagatggtttatttgggaaaagtgtacgggcagacta
ataaaaatgctgagtggtgatgaatctgttgtaaattgtgtacaatgccatccatttgat
tttgttgttgcaaccagtgggattgatagcacaataaagatctggactccaactgctcct
gttccatcttctgtagctggtggttcagcaggaccagaaactggtgatgtgttggttgct
atggagagcaatcaacaaaaactatcccgtagccataattctatcttgcccttattggaa
tcatttaggaggcaggattttcctgaagggtcgttacgcttgcatccatttgaatgtgct
caaagctaa
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