Glycine soja (wild soybean): 114415488
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Entry
114415488 CDS
T06057
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
114415488
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gsj03021
]
114415488
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114415488
Transcription machinery [BR:
gsj03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
114415488
RNA polymerase I system
114415488
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
114415488
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
Spt5-NGN
KOW4_SPT5
KOW2_Spt5
KOW
KOW6_SPT51-2
KOW7_SPT5
KOW5_SPT5
KOWx_SPT5
Spt5_N
GPKOW_C
DUF4438
Motif
Other DBs
NCBI-GeneID:
114415488
NCBI-ProteinID:
XP_028235997
LinkDB
All DBs
Position
6:10064474..10073087
Genome browser
AA seq
1039 aa
AA seq
DB search
MSRRGMDDDDEEEYEEEDEQVADFDDEEEEDNHRGRGGGGGRKRRRSGFIDDDAEEVDED
EDEEDDDDEDFDGRGGGGGRRRQYKKVSASNFFDEEAVVDSDEEEEEEEGEDDFIVEGGA
DLPEEDDGRKMRSSRMLPHHQEDHEDLEAMARSIQERYGRRLTDYDEETTDVEQQALLPS
VRDPKLWMVKCAIGRERETAVCLMQKYIDKGSELQIRSAIALDHLKNYIYVEADKEAHVR
EACKGLRNIFGQKITLVPIREMTDVLSVESKAIDLARDTWVRMKIGTYKGDLAKVVDVDN
VRQRVTVKLIPRIDLQALANKLEGREVVKKKAFVPPPRFMNVDEARELHIRVEHRRDAYG
ERFDAIGGMMFKDGFLYKTVSIKSISAQNIKPTFDELEKFRKPGESGDGDVASLSTLFAN
RKKGHFMKGDAVIVIKGDLKNLKGKVEKVDEDNVHIRPEMEDLPKTIAVNEKELCKYFEP
GNHVKVVSGAQEGATGMVVKVEQHVLILISDTTKEHIRVFADDVVESSEVTTGVTRIGDY
ELRDLVLLDNNSFGVIIRVESEAFQVLKGIPDRPEVVLIKLREIKCKIDKKISVQDRFKN
TVSSKDVVRIVDGPCKGKQGPVEHIYRGILFIFDRHHLEHAGFICAKAQSCVVVGGSRSS
GERNGDAYSRFASLRSPSRIPPSPRRFSRGGPMDSGGRHRGGRGHDSLAGTTVKVRQGPY
KGYRGRVIDVKGTTVRVELESQMKVVTVDRNHISDNVAVTPYRDTSRYGMGSETPMHPSR
TPLHPYMTPMRDPGATPIHDGMRTPMHSRAWNPYTPMSPPRDNWEDGNPGSWGASPQYQP
GSPPSRPYEAPTPGAGWASTPGGNYSEAGTPRDSSAYANAPSPYLPSTPGGQPMTPSSAS
YLPGTPGGQPMTPGTGGMDMMSPVLGGENEGPWFIPDILVNVHRAGEESIGVIREALPDG
SYRVGLGSSGNGETITALPNEMEAVVPRKSDKIKIMGGALRGATGKLIGVDGTDGIVKVD
DTLDVKILDLVILAKLAQP
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgccgtggcatggacgacgacgatgaggaggagtacgaggaggaggacgagcag
gtcgccgacttcgacgacgaggaggaggaggacaaccaccgaggacgcgggggtggtggc
ggcaggaagaggagaagatctggattcattgacgacgacgccgaagaggtcgatgaggac
gaggacgaggaggacgacgatgacgaggatttcgatggacggggtggtggtggcggtcgg
aggcgccagtacaagaaggtttccgcttctaatttcttcgacgaagaggccgtggtggat
agtgatgaggaagaggaagaagaggagggagaagacgacttcatcgttgaaggtggagcg
gatctgccagaagaagatgatgggagaaagatgcgtagtagccgtatgctgccacaccac
caagaggatcatgaagatcttgaagctatggccagaagcatccaggaacgatatggaagg
cgcctaacagattatgatgaagaaacaacagacgtagagcaacaagcccttttgccatct
gtgagagatccaaagctgtggatggtcaaatgtgcaattggtcgtgagagggaaacagct
gtttgcctcatgcaaaagtacatagataaggggtctgaattgcaaatcagatcagctatt
gctctcgatcatctcaaaaactatatatacgtggaagcagataaagaagcccatgtcaga
gaggcttgcaaaggtctacgcaatatatttggccaaaaaataacacttgttccaatcaga
gaaatgactgatgttttgtcagttgaaagcaaagctattgatcttgctagagatacttgg
gtcagaatgaaaattgggacttataaaggggaccttgccaaagtagtggatgttgataat
gtgcggcagagggttactgtcaaattaattccaaggatagacttacaggctcttgcaaac
aaattggaaggtagagaagttgtgaaaaagaaggcttttgttcctcctcctcgttttatg
aatgttgatgaagcaagggaactgcatatccgtgtggagcatagacgcgatgcctatggg
gaacgatttgatgcaattggaggcatgatgttcaaagatggattcttatataaaactgta
tcaataaaatccattagtgctcagaacatcaaacctacttttgatgagcttgaaaaattt
cgtaaaccgggtgagagtggagacggggacgtagctagtctatcaactttgtttgcaaac
aggaagaaaggccattttatgaaaggtgatgctgtaattgttataaagggagatttaaag
aacttgaaggggaaggtagagaaagttgatgaagataatgttcatataagaccagaaatg
gaggatcttccaaaaactattgctgtaaatgaaaaggaactttgtaaatattttgaacca
ggaaaccacgttaaggttgtttctggtgctcaagagggggctacgggcatggttgtgaag
gtggagcagcatgtgttgatcttaatatctgatacaacaaaagagcatatccgtgtattt
gcagatgatgttgtagaaagttcagaagtaactactggagttacaagaattggggactat
gaacttcgcgatcttgtattgctagataataatagctttggtgtgataatacgtgtagaa
agtgaggcatttcaggttcttaaggggattcctgacagacctgaagttgtgcttattaaa
ttaagagagatcaaatgcaagatagataagaaaataagtgtgcaggataggtttaagaat
acagtatcgtcaaaggatgttgtgcggatcgttgatggtccctgcaaaggaaaacaaggt
cctgtggagcacatatataggggaatcttgttcatctttgatcgccatcatcttgaacac
gcaggctttatatgtgctaaggcccaatcgtgtgtagttgtgggaggttcacgctccagt
ggtgaaagaaatggtgatgcctactcaagatttgccagtcttagaagtccaagtcgtatt
ccaccgtccccaaggaggttttctcgaggagggccaatggattctggagggagacatagg
ggtggaaggggccatgatagtttggccgggacaaccgttaaagtacgccagggtccctat
aaaggttaccgtgggcgtgttatagatgttaaaggcacaacagttcgtgttgagttggaa
tcccaaatgaaggttgtgacagttgaccgcaaccatatatctgacaatgtggctgtaacc
ccatatcgtgatacatctcgctatggaatgggaagtgaaacaccaatgcatccttctcga
actcccttacatccatatatgactccaatgagagatcctggagcaacacctattcatgat
ggaatgagaacacctatgcatagccgagcatggaatccttatactccaatgagtcctcca
agggataactgggaagatggaaatccaggctcttggggagccagtccacagtatcagcct
ggaagccctccttcacggccatatgaagccccaactcctggtgctggttgggctagcact
cccggtggaaattatagtgaagctggaacaccgcgggacagttctgcctatgccaatgct
ccaagcccatatttaccatcaacacctggtggacagcctatgacaccaagttcagcatct
tatcttcctggcacccctggaggacagcctatgactccaggcacaggtggtatggacatg
atgtctccagttttaggtggggaaaacgaagggccatggtttatcccagatatattggtc
aacgtacacagggctggagaggaatctattggagttataagagaggctctcccggatggc
tcttacagggtaggtcttggatcaagtggtaatggtgaaacgattacagcccttcctaat
gaaatggaggctgtggtaccaagaaaatcagacaaaataaagattatgggtggggcattg
cgtggtgcaaccggcaagttgattggtgtagatggtacggatggaattgtaaaggtagat
gacacattggatgtgaagattttagacttagttattttggcaaaattggctcaaccatga
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integrated database retrieval system
