KEGG   Glycine soja (wild soybean): 114415627
Entry
114415627         CDS       T06057                                 
Name
(RefSeq) protein TRANSPARENT TESTA GLABRA 1-like
  KO
K11805  DDB1- and CUL4-associated factor 7
Organism
gsj  Glycine soja (wild soybean)
Pathway
gsj03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:gsj00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    114415627
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:gsj04121]
    114415627
   03036 Chromosome and associated proteins [BR:gsj03036]
    114415627
Ubiquitin system [BR:gsj04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     114415627
Chromosome and associated proteins [BR:gsj03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.3/1.5)
     114415627
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40_CDC20-Fz Beta-prop_WDR5 WD40_Prp19 Beta-prop_WDR3_1st Beta-prop_CAF1B_HIR1 WD40 WD40_WDHD1_1st Beta-prop_EIPR1 WD40_Gbeta Beta-prop_RIG_2nd Beta-prop_TEP1_2nd WDR55 Beta-prop_EML_2 Beta-prop_Aladin Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd ANAPC4_WD40 Beta-prop_WDR41 EIF3I Beta-prop_WDR36-Utp21_1st Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd MIOS_WD40 WD40_RFWD3 Beta-prop_WDR19_1st Beta-prop_Vps41 AP5B1_barrel
Other DBs
NCBI-GeneID: 114415627
NCBI-ProteinID: XP_028236213
LinkDB
Position
6:complement(11281257..11282844)
AA seq 336 aa
MENSTEESHLRSENSVTYDSPYPIYGMSFSPSHPHRLALGSFIEEYNNRVDILSFHPDTL
SVTPHPSLSFDHPYPPTKLMFHPRKPSPSSSSDLLATSGDYLRLWEIRDNSVDAVSLFNN
SKTSEFCAPLTSFDWNDIDPNRIATSSIDTTCTIWDIERTLVETQLIAHDKEVYDIAWGE
ARVFASVSADGSVRIFDLRDKEHSTIIYESPHPDTPLLRLAWNKQDLRYMATILMDSNKV
VILDIRSPTTPVAELERHRGSVNAIAWAPHSSTHICSAGDDTQALIWELPTLASPTGIDP
VCMYSAGCEINQLQWSAAQPDWIAIAFANKMQLLKV
NT seq 1011 nt   +upstreamnt  +downstreamnt
atggagaattcgaccgaagaatcccatctccgatcggaaaactccgtcacttacgattcc
ccttaccctatctacggcatgtcattctccccctcccacccccaccgcctcgccctcggc
agcttcatcgaagaatacaacaaccgcgtcgacatcctctctttccaccctgacaccctt
tcggtaactccccacccttctctctccttcgaccacccttaccctcccaccaaactcatg
ttccacccccgcaaaccctccccttcctcttcctccgacctcctcgccacctccggcgac
tacctccgcctctgggagatccgtgataactccgtggatgccgtctccctcttcaacaac
agcaagaccagcgagttctgcgcccccttaacctctttcgactggaacgacatcgacccc
aaccgcatcgccacctccagcatcgacaccacctgcaccatctgggacatcgaacgcacc
ctcgtcgaaacccaactcatcgctcacgacaaggaggtttacgacatcgcctggggagag
gccagagtcttcgcctccgtctccgccgacggctccgttagaatcttcgaccttcgcgac
aaggagcactccaccatcatctacgagagcccccaccctgacacccctttgctccgcttg
gcttggaacaaacaggacctgaggtacatggccaccattttaatggacagtaataaagtt
gtgattttggatattaggtctcccactacccctgttgcggagttagagaggcaccgtggg
agtgtgaacgccattgcttgggctcctcatagctccacgcatatttgttctgctggtgat
gatactcaggctcttatttgggaattgcccacgcttgcttctcccactgggattgatccc
gtctgcatgtactctgctggctgtgaaattaaccagctgcagtggtccgccgcccagccc
gattggattgccattgcttttgccaacaagatgcagcttttgaaggtttga

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