Glycine soja (wild soybean): 114415694
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Entry
114415694 CDS
T06057
Name
(RefSeq) exosome complex exonuclease RRP44 homolog A-like isoform X1
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114415694
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114415694
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
114415694
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Ortholog
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GFIT
Motif
Pfam:
RNB
PIN_4
OB_Dis3
Rrp44_CSD1
Rrp44_S1
OB_HELZ2
CSD2
Motif
Other DBs
NCBI-GeneID:
114415694
NCBI-ProteinID:
XP_028236303
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All DBs
Position
6:11756863..11778674
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AA seq
934 aa
AA seq
DB search
MLHNKSFVKKTKGGKVMKQVREHYLRDDIYCGAPFCTVCDSSGARLSASPSTILVVDTNV
VLNQIDLLENPAIDDVVVLSIVLEEVKNKNMSVYNRIRAICSNSMRKFFVFSNEYHRDTY
IKEMSGETKNDRNDRAIRVATQWYQNHLGGAVKVLLITNDKENKRKASEEGILAETVESY
VKSLVRPDLLDLLVRPASEDVDMEEVEDLRPSKRKVIYSEHKPMSEITSGLHRGIYHQGK
LRVNRYNPFEAYVGSESIGDEIVIYGRSIMNRAFDGDIVAAELLPQDQWQGVSSLSIAHE
EDEDENEDVHLAPNSADDAPRAVSQQGSSEQLNAVPSRPCGRIVGIIKRNWHSYCGSLEP
MPMPAGNGGIAHALFVSKDRRTPKIRIQTRQLENLLDKRIIVAVDSWDRQSRYPSGHYVR
TIGKIDDRDTETEVVLIENDINTRPFSSQVLACLPPLPWVVSSEDLSNPIRKDLCHLCVF
SVDPPGCKDIDDALHCHSLPNGNFEVGVHIADVTNFVHPGTPLDDEAAQRGTSVYLVERR
IDMLPKPLTEDICSLRSDVERLAFSVIWEMTPEADIISTRYTKSVIKSSAALSYVEAQAR
MDDSRLMDPITADLRNMNSLAKKMRLRRIERGALTLASAEVKFQIDTETHDPLDIGMYQI
REANQMVEEFMLAANVSVAQQILNSFPLVSLLRRHPTPTREMLEPLLQTAAAVGLHLDVS
SSKALADSLDHAVGDDPYFNKLIRILATRCMTQAVYFCSGDLSPPEYHHYGLAAPLYTHF
TSPIRRYADVIVHRLLAASLGISKLPSVFQDRLQLTSIADNLNYRHRNAQYAGRASVELH
TLIYFRKRPTDTEARIVKIRSNGFFVFVPKYGIEGPVYLTKAEKGSGEWYVDDQQQKIKK
MDGSLSYSVLQTVQIHMEVVEPQPNRPKLQLTLI
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgctccacaacaagtccttcgtcaagaaaacaaaaggtggcaaagtcatgaagcaagtg
cgggagcactatctgcgcgatgatatatactgcggcgcaccgttttgcacagtttgcgat
tcttccggtgctcgcctcagtgcttctccttccaccattctcgtcgtcgacaccaatgtc
gttctcaaccagattgatttgctggagaatccggcgatcgacgatgttgtggtgttgtcc
attgtgttggaagaggttaagaacaagaacatgtctgtttacaaccgtataagagctatc
tgtagcaattccatgaggaagttctttgttttttccaatgaataccacagggatacatat
attaaggaaatgagtggggaaacaaaaaatgataggaatgatagagctattcgagtggct
actcagtggtatcagaatcatcttggtggtgcagtaaaggttttgctgataactaatgat
aaagagaacaaaagaaaggctagtgaagagggcattttggctgaaacagttgagtcatat
gtgaagtctttagtccgacctgatttacttgacctgcttgtgcggcctgcatctgaagat
gtggacatggaagaggttgaagatcttagaccatccaagaggaaagtcatctattctgag
cataagccgatgtcagaaattacttctggtttgcatcgtggaatatatcatcaagggaaa
cttcgtgtaaaccgttataatccatttgaagcatatgttgggagtgagagcattggtgat
gaaatagttatttatgggcgctcaatcatgaatcgagcatttgatggggatattgtggca
gctgaacttctgcctcaggaccagtggcaaggagtctcgtctctatctatagcccatgaa
gaagacgaggatgagaatgaagatgttcatctagctccaaatagtgctgatgatgcacct
agagctgtttctcagcagggttcttctgaacaactaaatgctgtacccagtcgtccttgt
ggtcgtattgttggcattataaagagaaactggcattcgtattgtggatctttggagcca
atgcctatgcctgcagggaatggtggtattgcccatgccttgtttgtctccaaagatcgc
agaactcccaagattcgaatccaaacccgtcaacttgagaaccttttggataagcggatt
attgtggcagttgattcttgggatcgtcagtctcgatatccatcaggccattatgtgcga
actatagggaagatagatgatagagatactgaaactgaggtggttttgatagaaaatgat
ataaatacacggccattctcttcacaagtgctggcatgcttgccaccattgccatgggta
gtctcttctgaagatttgtctaatccaatccggaaggatttgtgtcatctgtgtgtcttc
agtgtggaccctccaggctgcaaggatattgatgatgcactccactgtcactctcttcca
aatggaaactttgaagttggagttcatattgctgatgtgacaaattttgttcatcctggc
actccccttgatgatgaggctgcacaaaggggtacatctgtctaccttgttgagcggcgg
atagacatgcttcccaaacctcttacagaggacatatgttctcttcgttctgatgtggaa
aggcttgcattctctgtcatatgggaaatgacacctgaagccgacattatttctaccaga
tacacaaaaagtgtcataaaatcttctgcagcattgtcttatgttgaagcacaagcaagg
atggatgatagtcgtttgatggatccaattactgctgatttgaggaatatgaatagttta
gctaagaaaatgagattaaggcgtattgagagaggagctttgactcttgcatctgctgaa
gtcaaatttcagattgacacagagactcatgacccccttgatattggaatgtaccagatc
cgggaggccaatcaaatggtggaggagtttatgcttgctgctaatgtttccgttgcacaa
caaattcttaatagttttccattggtctcattattaaggcgtcatccaacaccaactaga
gagatgcttgaacccttgttacagactgctgctgcagttggcttgcacttggatgtctca
tcatcaaaagcgttggctgattctcttgaccatgctgtgggtgatgatccttacttcaat
aagttaatccgtatactggcaactaggtgcatgactcaggcagtttatttctgcagtggt
gatcttagccctccagaatatcatcattatgggcttgcagctcctttgtatacccatttc
acatcacctataagaagatatgcagatgtcattgtgcacaggctacttgctgcttcttta
ggaatatccaagttaccgtctgtatttcaagacagactccagctcactagtattgcagac
aatttaaattatcggcacaggaatgcccagtatgctgggcgggcatctgtagagctacat
actctaatttatttcaggaagaggcctacagacaccgaggctagaatagtgaaaataaga
tctaatggattttttgtgtttgttcccaaatatggcatagaaggacctgtatatttgaca
aaagcagaaaagggaagtggagaatggtatgtagatgatcaacagcagaagattaaaaag
atggacggtagcctttcatacagtgttttgcagacagtccaaattcacatggaggttgtg
gagcctcagccaaaccgaccaaaacttcagcttaccctcatctag
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