Glycine soja (wild soybean): 114417479
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Entry
114417479 CDS
T06057
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03013
Nucleocytoplasmic transport
gsj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
114417479
03015 mRNA surveillance pathway
114417479
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114417479
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
114417479
mRNA cycle factors
P-body specific factors
114417479
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
DUF6980
Motif
Other DBs
NCBI-GeneID:
114417479
NCBI-ProteinID:
XP_028238525
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Position
6:48515023..48524537
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AA seq
547 aa
AA seq
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MVMEKKMKVRSEREKTKVVIRHLPPSLSQSDLSQHIDSHFASRYNWFSFRPGNNSHTRQR
HSRAYIDFKCPDDVFEFAEFFDGHVFVNERGAQHKVIVEYAPSQRVPKPSAKKDGREGTI
YKDPDYLEFLKLIAKPQEHLPSAEVQLERKEAEQAGANKETRIVTPLMEFVRQRRAVDSG
MQASSAVAKVSRRSRAALPGKPGSGNTKRGSEKKKYVQKDNAKGVARKESKDKSAFVVVP
RRDNQSAESSIKGISEIETLHGIEGPFSGISLTSDSGKKKILLLKGKQREIPSVGFVLPI
KAIEGTVKQQNIQSGNSPISAPAKQNQRREASGRLIRSILLNNESRQSLSTTGAQHKIQI
LSSENGKRPPRTFGSRSGLNDQVSNNDAAQVNSEGDSKMALDKKFVKRDLHGLGSGEKTE
KRTRNKDRPDRGVWTPLRRSDVSNAGNDHSSSSLAQPTQSNPESAEGEVKENVPSGNRGG
EFSASAGGRGNPSIENDSQRNFTRRGASYIVKDDGAVSISEGKPSKKSVGHSAHEKQVWV
QKSSSGS
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atggtgatggaaaagaagatgaaggtccgttcggaaagggaaaagacgaaagttgtgatt
aggcatttgcccccttctctctctcaatccgatctctcccaacacatcgattctcacttc
gcttctcgctacaattggttctctttccgtcccggcaacaacagtcacactcgtcagagg
cattcccgtgcctatatagacttcaagtgtcccgatgacgttttcgagttcgccgagttc
tttgatggacacgtttttgttaacgagcgaggtgcccagcataaagttatagttgagtac
gctccttctcagcgtgttccaaagcctagtgccaaaaaggatggacgtgaagggactata
tacaaagatccagactatcttgagttcctcaaactaattgcaaagcctcaagagcatctt
cctagtgcagaggtacaattggaaagaaaagaagctgagcaagctggggctaacaaggaa
acacgaattgtcacacccctgatggaatttgttcgtcagagacgtgctgttgacagtggt
atgcaggcttcatcagcggtggcaaaagttagcagaagatccagagctgctttgcctggc
aagcctggctcaggcaatactaaacgaggatctgaaaagaaaaagtatgttcagaaggac
aatgccaagggtgttgctcgcaaagagtcaaaagacaagtcagcctttgttgtggtcccc
cggcgagacaatcaatcagctgaatcaagtataaaaggaatttctgaaattgaaactttg
catggtattgaaggtcccttttctggaatttcactgacttctgactcaggaaagaaaaaa
atccttcttcttaaagggaaacagcgggaaattcccagtgtaggttttgttttaccaatt
aaggctattgagggcacagtaaaacagcaaaacatacaatctggaaattctcctatttct
gctcctgcaaaacagaaccagagacgtgaagctagtggaagattgattaggagcatactt
ctaaataatgaatctcgtcagagtctgtctacaactggtgcccaacataaaattcaaatt
ttaagttctgaaaatgggaagcgaccccctcgtacttttggctcaaggtctgggttaaat
gatcaagtctcgaataatgatgctgcacaagttaattctgaaggggattccaaaatggca
ttggacaaaaagttcgtaaaaagggatctgcatggtttgggtagcggtgagaaaacagaa
aaacgtactagaaacaaggatagacctgatcgtggtgtttggacaccccttcgccgttct
gatgtttcaaatgctggtaatgaccattcatcatcctcattggcacagcctactcagtca
aatcctgaatctgctgaaggagaagtaaaagaaaatgttccttctggaaacaggggaggc
gaattctctgcttctgcaggtggacgtgggaatccttccattgagaatgattctcagaga
aattttactcgccgtggcgcttcctatatagtgaaggatgatggtgcagtcagtataagt
gaagggaaaccttccaagaaaagtgttgggcatagcgctcacgagaagcaagtctgggtt
cagaaatcttcttcagggtcataa
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