Glycine soja (wild soybean): 114419718
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Entry
114419718 CDS
T06057
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03015
mRNA surveillance pathway
gsj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114419718
09123 Folding, sorting and degradation
03018 RNA degradation
114419718
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114419718
03041 Spliceosome [BR:
gsj03041
]
114419718
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
114419718
mRNA cycle factors
Stress granule specific factors
114419718
Spliceosome [BR:
gsj03041
]
Complex C
Other components
Complex C specific factors
114419718
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_occluded
RRM_5
RRM_7
RRM_3
MARF1_RRM1
DUF5062
Motif
Other DBs
NCBI-GeneID:
114419718
NCBI-ProteinID:
XP_028241285
LinkDB
All DBs
Position
7:complement(40894604..40900132)
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AA seq
651 aa
AA seq
DB search
MAQVQVPPQNAMPGPNGGGGAGGAGNQFVTTSLYVGDLDPNVTDAQLYDLFNQLGQVVSV
RVCRDLTSRRSLGYGYVNFSNPQDAARALDVLNFTPLNNRPIRIMYSHRDPSIRKSGQGN
IFIKNLDRAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLN
GMLLNDKQVYVGPFLRKQERESAADKAKFNNVFVKNLSESTTDDELKNTFGEFGTITSAV
VMRDGDGKSKCFGFVNFENADDAARAVEALNGKNFDDKEWYVGKAQKKSERENELKQRFE
QSMKEAADKYQGANLYVKNLDDSIGDEKLKELFSPFGTITSCKVMRDPNGLSRGSGFVAF
STPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVGMPPSVGPRVPM
YPPGGPGIGQQLFYSQGPPAIIPSQPGFGYQQQLMPGMRPGAAPVPNFFVPMVQQGQQGQ
RPGGRRPGAVQQSQQPVPMMPQQMLPRGRVYRYPPGRGIPDVPIPGVAGGMFSVPYDVGG
MPLRDASISQQIPVGALATALANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMD
QTEVLHLLESPEALKAKVAEAMDVLRNVAQQQAGGTADQLASLSLNDNLVS
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atggctcaggttcaggttccgcctcagaatgcgatgccaggtcccaacggtggtggtggt
gccggtggtgctggaaaccagttcgtaacgacgtcgctttacgtcggagatctcgacccg
aacgtcacggacgcgcagctctatgacttgttcaaccaattggggcaagtcgtgtccgtt
agggtttgcagggatttgaccagccggagatcgctcggttatggttatgtcaactttagc
aacccgcaagacgctgctagagcattggatgttctgaacttcactcctctcaataacagg
cccatccgtattatgtattcgcatcgtgatcccagtatccgtaaaagtggacaaggaaat
atatttattaagaatttggatagggcaattgaccacaaggcattgcatgataccttttct
acatttggaaatatcctttcgtgcaaggtagctacggattcatctgggcaatcaaaaggc
tatggctttgttcaatttgataatgaggaatctgcccaaaaagctatagagaagctgaat
ggtatgctgttgaatgataaacaagtgtacgtgggacccttccttcgcaagcaagagaga
gaaagtgctgctgacaaggcaaaattcaacaatgtttttgtgaagaatctatcagaatca
accaccgatgatgagttgaagaacacttttggtgaatttggaactattactagtgctgta
gtaatgagggatggggatgggaaatcaaagtgttttggatttgtgaattttgagaatgct
gatgatgctgctagggctgttgaggctctcaatggcaaaaattttgatgacaaagaatgg
tatgttggaaaagctcagaagaaatctgaaagggagaatgaattgaaacaacgatttgag
cagagcatgaaagaagctgctgataaatatcaaggcgcaaacttgtatgtaaaaaattta
gatgatagcattggtgatgaaaaacttaaggagctgttctccccttttggtaccattacc
tcttgcaaggttatgagagacccaaatggcttaagtcgtggatcgggttttgttgcattc
tcgactcccgaggaggcatctagagcactcctggagatgaatggcaaaatggtggtaagc
aaacctctgtatgtgactctagcccaaaggaaagaagataggagagctagactgcaggct
cagtttgctcaaatgcgacctgttggaatgccaccatctgttggtcctcgtgtgccaatg
tatcccccaggtggtccaggtattggtcaacaattattttatagccaaggccctcctgct
atcattccttcccagcctggatttggctatcaacaacaacttatgcctggtatgaggcca
ggtgcagctcctgtgccgaattttttcgtgccaatggttcagcagggacaacagggacag
cgtcccggtggaaggcgtccaggtgcagttcagcagtcccagcagccagttcctatgatg
ccacagcagatgcttcctaggggacgtgtctatcgttatcctcctggtaggggtattcct
gatgttcctatacctggggttgctggaggtatgttttctgttccatatgatgtgggtggg
atgccgctgcgtgatgcatcaatctcccagcaaatacctgttggggctctggcaacggct
ctggctaatgcttctccagagcagcaaaggacgatgctgggtgagaatctctaccccctt
gtggaacagttagagcctgataatgctgccaaagtgacaggcatgcttcttgagatggac
cagactgaagttctgcatttgcttgagtcgccagaagccctgaaagcaaaggtggctgag
gcaatggacgtcctaaggaatgttgctcagcagcaggctggcggtactgctgatcagctg
gcttccttatctcttaatgacaaccttgtttcttaa
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